Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS03195 and ABI39_RS03200 are separated by 13 nucleotidesABI39_RS03200 and ABI39_RS03205 are separated by 221 nucleotidesABI39_RS03205 and ABI39_RS03210 are separated by 92 nucleotidesABI39_RS03210 and ABI39_RS03215 are separated by 558 nucleotides ABI39_RS03195: ABI39_RS03195 - S1 RNA-binding domain-containing protein, at 926,801 to 931,000 _RS03195 ABI39_RS03200: ABI39_RS03200 - helix-turn-helix transcriptional regulator, at 931,014 to 931,226 _RS03200 ABI39_RS03205: ABI39_RS03205 - site-specific integrase, at 931,448 to 932,458 _RS03205 ABI39_RS03210: ABI39_RS03210 - helix-turn-helix domain-containing protein, at 932,551 to 933,456 _RS03210 ABI39_RS03215: ABI39_RS03215 - outer membrane beta-barrel protein, at 934,015 to 936,582 _RS03215
Group Condition ABI39_RS03195 ABI39_RS03200 ABI39_RS03205 ABI39_RS03210 ABI39_RS03215
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.3 -1.0 -0.1 +0.2 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.4 -0.1 -0.8 +0.0 -0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 -0.5 -0.5 -0.0 -0.0
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.0 -0.8 -0.2 +0.1 -0.0
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.3 -0.4 -0.1 -0.3 +0.1
carbon source Beta-Lactose 2.5 mg/ml (C) -0.5 +0.1 +0.1 +0.2 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.7 +0.0 +0.2 +0.2 -0.1
carbon source NAG 2.5 mg/ml (C) -0.2 -0.5 +0.3 +0.2 -0.2
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.3 +0.3 -0.5 +0.2 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.4 -0.7 +0.2 +0.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.3 -0.2 -0.2 +0.5 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.8 +0.4 +0.1 +0.4 -0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.4 +0.5 -0.7 +0.6 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.3 -0.6 +0.2 -0.1 +0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.2 +0.5 -0.1 +0.3 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.6 +0.4 -0.2 +1.0 -0.1
carbon source Galactan from Potato (C) +0.2 +0.6 -0.2 -0.1 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.3 +0.4 -0.8 +0.4 +0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.0 +0.6 -0.2 +0.3 +0.1
carbon source Xylan from Beechwood (C) -0.0 +0.5 -0.1 +0.3 +0.2
carbon source D-Fructose (C) -0.2 +0.5 +0.1 +0.4 +0.0
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.2 +1.0 -0.4 +0.4 +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 +1.2 -0.1 +0.3 -0.0
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.0 +0.9 -0.3 +0.4 +0.1
carbon source amylopectin from maize (C) +0.1 +0.6 -0.2 +0.5 -0.0
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.1 +1.1 -0.5 +0.6 +0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.7 +0.9 +0.2 +0.6 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.0 +0.5 +0.2 +0.2 +0.4
carbon source Xylan from Beechwood (C) -0.1 +0.9 +0.0 +0.4 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.1 +1.5 -0.1 -0.1 +0.2
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