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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS03195 and ABI39_RS03200 are separated by 13 nucleotides
ABI39_RS03200 and ABI39_RS03205 are separated by 221 nucleotides
ABI39_RS03205 and ABI39_RS03210 are separated by 92 nucleotides
ABI39_RS03210 and ABI39_RS03215 are separated by 558 nucleotides
ABI39_RS03195: ABI39_RS03195 - S1 RNA-binding domain-containing protein, at 926,801 to 931,000
_RS03195
ABI39_RS03200: ABI39_RS03200 - helix-turn-helix transcriptional regulator, at 931,014 to 931,226
_RS03200
ABI39_RS03205: ABI39_RS03205 - site-specific integrase, at 931,448 to 932,458
_RS03205
ABI39_RS03210: ABI39_RS03210 - helix-turn-helix domain-containing protein, at 932,551 to 933,456
_RS03210
ABI39_RS03215: ABI39_RS03215 - outer membrane beta-barrel protein, at 934,015 to 936,582
_RS03215
Group
Condition
ABI39
_RS03195
ABI39
_RS03200
ABI39
_RS03205
ABI39
_RS03210
ABI39
_RS03215
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.3
-1.0
-0.1
+0.2
-0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.4
-0.1
-0.8
+0.0
-0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.1
-0.5
-0.5
-0.0
-0.0
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.0
-0.8
-0.2
+0.1
-0.0
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.3
-0.4
-0.1
-0.3
+0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.5
+0.1
+0.1
+0.2
-0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.7
+0.0
+0.2
+0.2
-0.1
carbon source
NAG 2.5 mg/ml (C)
-0.2
-0.5
+0.3
+0.2
-0.2
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.3
+0.3
-0.5
+0.2
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.2
+0.4
-0.7
+0.2
+0.0
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.3
-0.2
-0.2
+0.5
+0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.8
+0.4
+0.1
+0.4
-0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.4
+0.5
-0.7
+0.6
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.3
-0.6
+0.2
-0.1
+0.3
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.2
+0.5
-0.1
+0.3
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.6
+0.4
-0.2
+1.0
-0.1
carbon source
Galactan from Potato (C)
+0.2
+0.6
-0.2
-0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.3
+0.4
-0.8
+0.4
+0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.0
+0.6
-0.2
+0.3
+0.1
carbon source
Xylan from Beechwood (C)
-0.0
+0.5
-0.1
+0.3
+0.2
carbon source
D-Fructose (C)
-0.2
+0.5
+0.1
+0.4
+0.0
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.2
+1.0
-0.4
+0.4
+0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.5
+1.2
-0.1
+0.3
-0.0
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.0
+0.9
-0.3
+0.4
+0.1
carbon source
amylopectin from maize (C)
+0.1
+0.6
-0.2
+0.5
-0.0
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.1
+1.1
-0.5
+0.6
+0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.7
+0.9
+0.2
+0.6
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.0
+0.5
+0.2
+0.2
+0.4
carbon source
Xylan from Beechwood (C)
-0.1
+0.9
+0.0
+0.4
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.1
+1.5
-0.1
-0.1
+0.2
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