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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS03165 and ABI39_RS03170 are separated by 208 nucleotides
ABI39_RS03170 and ABI39_RS03175 overlap by 4 nucleotides
ABI39_RS03175 and ABI39_RS03180 are separated by 2 nucleotides
ABI39_RS03180 and ABI39_RS03185 are separated by 73 nucleotides
ABI39_RS03165: ABI39_RS03165 - DUF3408 domain-containing protein, at 918,891 to 919,376
_RS03165
ABI39_RS03170: ABI39_RS03170 - plasmid mobilization relaxosome protein MobC, at 919,585 to 919,974
_RS03170
ABI39_RS03175: ABI39_RS03175 - relaxase/mobilization nuclease domain-containing protein, at 919,971 to 920,897
_RS03175
ABI39_RS03180: ABI39_RS03180 - hypothetical protein, at 920,900 to 921,535
_RS03180
ABI39_RS03185: ABI39_RS03185 - macro domain-containing protein, at 921,609 to 922,304
_RS03185
Group
Condition
ABI39
_RS03165
ABI39
_RS03170
ABI39
_RS03175
ABI39
_RS03180
ABI39
_RS03185
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.4
-2.9
-0.1
-0.9
+0.0
carbon source
(+)-Arabinogalactan (C)
-0.6
-1.8
+0.1
-0.3
-0.2
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.4
-1.9
-0.1
+0.2
-0.3
carbon source
B-glucan from yeast (C)
-0.0
-1.6
+0.0
-0.4
-0.3
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.4
-1.5
-0.0
-0.3
+0.1
carbon source
B-glucan from yeast (C)
-0.4
-1.9
-0.2
+0.3
+0.3
carbon source
N-acetylneuraminic (C)
-0.3
-1.8
+0.1
+0.2
+0.0
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
+0.1
-1.1
-0.1
-0.5
-0.1
carbon source
beta-Cyclodextrin (C)
-0.3
-1.4
+0.1
-0.3
+0.2
carbon source
Mucin from porcine stomach type III (C)
-0.5
-0.7
-0.2
-0.5
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.1
-1.6
-0.1
-0.3
+0.1
carbon source
N-acetylneuraminic (C)
-0.5
-1.5
+0.2
-0.2
+0.3
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.0
-1.6
-0.2
+0.3
-0.2
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.2
-1.3
+0.2
-0.5
+0.2
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.0
-0.9
+0.3
+0.2
-0.7
carbon source
amylopectin from maize (C)
-0.4
-0.8
+0.1
-0.3
+0.4
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.5
+0.7
-0.8
-0.2
-0.1
carbon source
Glucose-6-Phosphate (C)
-0.3
-1.2
+0.2
+0.4
+0.3
carbon source
Fructose-6-phosphate (C)
+0.4
-1.3
+0.1
+0.2
+0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.4
-1.0
+0.3
+0.3
+0.3
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.2
+0.9
+0.1
-0.5
-0.7
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.9
+0.3
-0.4
+0.2
+0.4
carbon source
Galactan from Potato (C)
+0.0
-1.1
-0.3
-0.2
+1.2
carbon source
Galactan from Potato (C)
+0.3
-0.4
-0.4
-0.3
+0.9
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.2
+1.1
-0.3
+0.1
-0.4
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.6
+1.4
-0.1
+0.2
-0.5
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
-0.7
+1.2
+0.1
-0.1
+0.0
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.3
+0.3
-0.4
+0.5
+0.5
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+1.5
-0.3
+0.0
-0.4
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.4
+1.1
+0.1
-0.1
+0.7
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