Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS03020 and ABI39_RS03025 are separated by 11 nucleotidesABI39_RS03025 and ABI39_RS03030 are separated by 140 nucleotidesABI39_RS03030 and ABI39_RS03035 are separated by 148 nucleotidesABI39_RS03035 and ABI39_RS03040 are separated by 7 nucleotides ABI39_RS03020: ABI39_RS03020 - RagB/SusD family nutrient uptake outer membrane protein, at 877,386 to 879,005 _RS03020 ABI39_RS03025: ABI39_RS03025 - TonB-dependent receptor, at 879,017 to 882,088 _RS03025 ABI39_RS03030: ABI39_RS03030 - response regulator, at 882,229 to 886,389 _RS03030 ABI39_RS03035: ABI39_RS03035 - AraC family transcriptional regulator, at 886,538 to 887,458 _RS03035 ABI39_RS03040: ABI39_RS03040 - lytic transglycosylase domain-containing protein, at 887,466 to 888,464 _RS03040
Group Condition ABI39_RS03020 ABI39_RS03025 ABI39_RS03030 ABI39_RS03035 ABI39_RS03040
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.2 +0.0 +0.1 -0.6 -0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.0 -0.1 +0.0 -0.4 -0.4
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.1 +0.1 -0.1 -0.6
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.0 -0.6 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.3 +0.1 -0.2 -0.3 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.1 +0.0 -0.3 -0.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 +0.3 +0.1 -0.3 -0.6
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.0 +0.1 +0.1 -0.2 -0.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.0 -0.1 -0.6
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -0.0 -0.1 +0.1 -0.5 -0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.3 -0.2 -0.7
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 +0.1 -0.1 -0.3 -0.4
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -0.1 +0.2 +0.0 -0.2 -0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 -0.1 +0.2 -0.1 -0.3
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -0.2 +0.3 +0.0 -0.2 -0.0
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.1 +0.2 +0.1 -0.4 +0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.1 +0.1 -0.1 -0.3
carbon source amylopectin from maize (C) +0.1 -0.0 +0.2 -0.4 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.0 +0.3 -0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +0.1 +0.1 -0.9 +0.8
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.2 +0.1 +0.0 -0.4 +0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.0 +0.1 +0.1 -0.4 +0.5
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.0 +0.1 +0.1 -0.4 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.0 +0.1 +0.2 -0.4 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 +0.1 +0.1 -0.8 +1.1
carbon source Galactan from Potato (C) -0.2 +0.0 +0.1 -0.8 +1.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.3 -0.1 +0.2 -0.5 +0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.0 +0.2 +0.1 -0.4 +0.8
carbon source Galactan from Potato (C) +0.0 +0.3 +0.2 -0.7 +1.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 +0.0 +0.2 -1.0 +1.7
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ABI39_RS03020
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