Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS02265 and ABI39_RS02270 are separated by 29 nucleotidesABI39_RS02270 and ABI39_RS02275 are separated by 15 nucleotidesABI39_RS02275 and ABI39_RS02280 are separated by 14 nucleotidesABI39_RS02280 and ABI39_RS02285 are separated by 228 nucleotides ABI39_RS02265: ABI39_RS02265 - adenylyl-sulfate kinase, at 661,023 to 661,637 _RS02265 ABI39_RS02270: ABI39_RS02270 - SLC13/DASS family transporter, at 661,667 to 663,220 _RS02270 ABI39_RS02275: ABI39_RS02275 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 663,236 to 664,045 _RS02275 ABI39_RS02280: ABI39_RS02280 - BamA/TamA family outer membrane protein, at 664,060 to 665,268 _RS02280 ABI39_RS02285: ABI39_RS02285 - DNA mismatch repair endonuclease MutL, at 665,497 to 667,365 _RS02285
Group Condition ABI39_RS02265 ABI39_RS02270 ABI39_RS02275 ABI39_RS02280 ABI39_RS02285
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.4 -0.4 +0.8 -0.2 -5.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 -0.3 -0.3 -0.2 -3.3
carbon source N-acetylneuraminic (C) -0.2 +0.1 -0.3 +0.1 -3.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.2 -0.0 -0.1 +0.0 -3.0
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.6 -0.2 +0.0 +0.2 -2.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 -0.1 -0.2 -0.1 -2.9
carbon source Galactan from Potato (C) -0.5 -0.1 +0.1 +0.6 -2.8
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.3 -0.0 -0.3 -0.0 -2.6
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.4 -0.0 -0.1 +0.0 -2.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 -0.1 -0.0 +0.1 -2.1
carbon source D-Glucose 5 mg/ml (C) +0.1 +0.1 -0.0 +0.1 -2.6
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.3 -0.1 -0.5 -0.1 -1.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.7 -0.1 -0.3 +0.6 -1.9
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 +0.1 -0.2 -0.2 -2.0
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.1 +0.3 -0.4 +0.2 -2.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 -0.0 -0.8 -0.1 -1.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.3 -0.3 -0.2 -0.3 -1.3
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) -0.1 -0.0 -0.1 +0.0 -2.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.5 -0.1 +0.0 +0.1 -1.7
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.1 -0.0 -0.3 -0.1 -1.7
carbon source D-Glucose 2.5 mg/ml (C) -0.3 -0.2 -0.2 -0.2 -1.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.1 +0.0 -0.1 -0.0 -2.0
carbon source D-Mannose 2.5 mg/ml (C) +0.2 -0.2 -0.1 -0.1 -1.8
carbon source (+)-Arabinogalactan (C) +0.2 +0.0 -0.1 -0.0 -1.9
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.2 +0.1 -0.3 +0.1 -1.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.2 +0.3 -0.4 -1.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.5 -0.0 +0.0 +0.1 -1.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.5 -0.0 -0.3 -0.3 -0.9
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.1 +0.0 -0.3 +0.2 +2.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.3 +0.0 +0.2 +0.5 +4.1
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