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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS02265 and ABI39_RS02270 are separated by 29 nucleotides
ABI39_RS02270 and ABI39_RS02275 are separated by 15 nucleotides
ABI39_RS02275 and ABI39_RS02280 are separated by 14 nucleotides
ABI39_RS02280 and ABI39_RS02285 are separated by 228 nucleotides
ABI39_RS02265: ABI39_RS02265 - adenylyl-sulfate kinase, at 661,023 to 661,637
_RS02265
ABI39_RS02270: ABI39_RS02270 - SLC13/DASS family transporter, at 661,667 to 663,220
_RS02270
ABI39_RS02275: ABI39_RS02275 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 663,236 to 664,045
_RS02275
ABI39_RS02280: ABI39_RS02280 - BamA/TamA family outer membrane protein, at 664,060 to 665,268
_RS02280
ABI39_RS02285: ABI39_RS02285 - DNA mismatch repair endonuclease MutL, at 665,497 to 667,365
_RS02285
Group
Condition
ABI39
_RS02265
ABI39
_RS02270
ABI39
_RS02275
ABI39
_RS02280
ABI39
_RS02285
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.4
-0.4
+0.8
-0.2
-5.0
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.1
-0.3
-0.3
-0.2
-3.3
carbon source
N-acetylneuraminic (C)
-0.2
+0.1
-0.3
+0.1
-3.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.2
-0.0
-0.1
+0.0
-3.0
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.6
-0.2
+0.0
+0.2
-2.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
-0.1
-0.2
-0.1
-2.9
carbon source
Galactan from Potato (C)
-0.5
-0.1
+0.1
+0.6
-2.8
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.3
-0.0
-0.3
-0.0
-2.6
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.4
-0.0
-0.1
+0.0
-2.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.3
-0.1
-0.0
+0.1
-2.1
carbon source
D-Glucose 5 mg/ml (C)
+0.1
+0.1
-0.0
+0.1
-2.6
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.3
-0.1
-0.5
-0.1
-1.5
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.7
-0.1
-0.3
+0.6
-1.9
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
+0.1
-0.2
-0.2
-2.0
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.1
+0.3
-0.4
+0.2
-2.3
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.1
-0.0
-0.8
-0.1
-1.5
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.3
-0.3
-0.2
-0.3
-1.3
carbon source
Xylan from corn core; autoclaved 2.5 mg/ml (C)
-0.1
-0.0
-0.1
+0.0
-2.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.5
-0.1
+0.0
+0.1
-1.7
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
-0.1
-0.0
-0.3
-0.1
-1.7
carbon source
D-Glucose 2.5 mg/ml (C)
-0.3
-0.2
-0.2
-0.2
-1.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.1
+0.0
-0.1
-0.0
-2.0
carbon source
D-Mannose 2.5 mg/ml (C)
+0.2
-0.2
-0.1
-0.1
-1.8
carbon source
(+)-Arabinogalactan (C)
+0.2
+0.0
-0.1
-0.0
-1.9
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.2
+0.1
-0.3
+0.1
-1.4
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.2
+0.3
-0.4
-1.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.5
-0.0
+0.0
+0.1
-1.7
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.5
-0.0
-0.3
-0.3
-0.9
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.1
+0.0
-0.3
+0.2
+2.3
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.3
+0.0
+0.2
+0.5
+4.1
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