Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS02120 and ABI39_RS02125 are separated by 286 nucleotidesABI39_RS02125 and ABI39_RS02130 are separated by 64 nucleotidesABI39_RS02130 and ABI39_RS02135 are separated by 1 nucleotidesABI39_RS02135 and ABI39_RS02140 are separated by 31 nucleotides ABI39_RS02120: ABI39_RS02120 - sigma-54-dependent Fis family transcriptional regulator, at 622,708 to 624,090 _RS02120 ABI39_RS02125: ABI39_RS02125 - hypothetical protein, at 624,377 to 624,682 _RS02125 ABI39_RS02130: ABI39_RS02130 - RNA pseudouridine synthase, at 624,747 to 625,418 _RS02130 ABI39_RS02135: ABI39_RS02135 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 625,420 to 626,166 _RS02135 ABI39_RS02140: ABI39_RS02140 - TetR/AcrR family transcriptional regulator, at 626,198 to 626,797 _RS02140
Group Condition ABI39_RS02120 ABI39_RS02125 ABI39_RS02130 ABI39_RS02135 ABI39_RS02140
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -4.6 -0.0 N.D. -4.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -1.4 +0.1 N.D. -5.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 -2.4 -0.2 N.D. -4.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 -1.6 +0.2 N.D. -5.1
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) -0.0 -1.3 -0.3 N.D. -4.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.4 -0.6 -0.5 N.D. -4.3
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) -0.2 -0.5 -0.6 N.D. -4.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 -0.6 -0.3 N.D. -4.5
carbon source Galactan from Potato (C) -0.1 +0.2 -0.1 N.D. -5.2
carbon source D-Mannose 2.5 mg/ml (C) -0.2 -1.9 -0.4 N.D. -2.6
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.2 -3.2 -0.3 N.D. -1.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 +0.1 -0.3 N.D. -4.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.3 -0.5 N.D. -4.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 -0.8 -0.3 N.D. -3.2
carbon source D-Glucose 2.5 mg/ml (C) +0.0 -0.8 -0.3 N.D. -3.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 -3.4 -0.3 N.D. -0.6
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.1 +0.1 -0.2 N.D. -4.2
carbon source NAG 2.5 mg/ml (C) +0.0 +0.6 -0.6 N.D. -4.1
carbon source D-Raffinose 2.5 mg/ml (C) -0.0 -0.7 -0.1 N.D. -3.3
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.1 -0.6 -0.4 N.D. -2.9
carbon source D-Fructose 2.5 mg/ml (C) -0.2 -1.1 -0.0 N.D. -2.7
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.1 -1.3 -0.3 N.D. -2.3
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 -3.1 +0.5 N.D. -1.2
carbon source (+)-Arabinogalactan (C) +0.2 -0.2 +0.0 N.D. -3.3
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 +1.0 +0.9 N.D. -5.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 -0.3 +0.1 N.D. -3.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.1 +0.6 +0.0 N.D. -3.3
carbon source Galactan from Potato (C) -0.2 +1.8 -0.4 N.D. -2.8
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.2 -1.6 -0.1 N.D. +1.9
carbon source Mucin from porcine stomach type III (C) +0.1 +0.3 +0.3 N.D. +3.2
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