Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS02110 and ABI39_RS02115 are separated by 7 nucleotidesABI39_RS02115 and ABI39_RS02120 are separated by 101 nucleotidesABI39_RS02120 and ABI39_RS02125 are separated by 286 nucleotidesABI39_RS02125 and ABI39_RS02130 are separated by 64 nucleotides ABI39_RS02110: ABI39_RS02110 - MATE family efflux transporter, at 618,715 to 620,031 _RS02110 ABI39_RS02115: ABI39_RS02115 - response regulator, at 620,039 to 622,606 _RS02115 ABI39_RS02120: ABI39_RS02120 - sigma-54-dependent Fis family transcriptional regulator, at 622,708 to 624,090 _RS02120 ABI39_RS02125: ABI39_RS02125 - hypothetical protein, at 624,377 to 624,682 _RS02125 ABI39_RS02130: ABI39_RS02130 - RNA pseudouridine synthase, at 624,747 to 625,418 _RS02130
Group Condition ABI39_RS02110 ABI39_RS02115 ABI39_RS02120 ABI39_RS02125 ABI39_RS02130
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 +0.2 +0.2 -4.6 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.1 +0.1 -3.4 -0.3
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.1 -0.4 +0.2 -3.2 -0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.4 -2.5 -0.2
carbon source D-Mannose 2.5 mg/ml (C) -0.3 +0.1 -0.2 -1.9 -0.4
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) +0.1 -0.0 +0.0 -2.6 +0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.0 +0.1 +0.2 -3.1 +0.5
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) +0.0 -0.0 -0.1 -2.1 +0.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +0.3 -0.1 -0.2 -1.6 -0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.3 +0.1 +0.2 -2.5 +0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 +0.2 -0.0 -1.3 -0.6
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 +0.2 -0.0 -1.6 +0.2
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.3 -0.0 -0.0 -1.3 -0.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 +0.3 -0.1 -1.3 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +1.1 +0.3 -0.0 -2.4 -0.2
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.1 -0.0 -0.1 -1.4 +0.4
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.3 +0.2 -0.4 -0.6 -0.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 +0.2 +0.3 -0.5 -0.9
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.6 +0.0 +0.1 -1.1 +0.1
carbon source D-Glucosamine Hydrochloride 2.5 mg/ml (C) +0.4 +0.3 +0.2 -0.9 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.9 +0.7 -0.1 -1.4 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.8 +0.2 -0.2 +0.3 -0.5
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.3 +0.0 +0.0 +1.1 -0.5
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.5 +0.2 -0.1 +1.1 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.8 +0.6 +0.6 -0.3 +0.1
carbon source amylopectin from maize (C) -0.3 +0.1 +0.1 +1.2 +0.7
carbon source amylopectin from maize (C) -0.4 +0.0 -0.1 +2.1 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.6 +0.9 +0.0 +0.9 -0.5
carbon source Galactan from Potato (C) +0.5 +1.0 -0.2 +1.8 -0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 +0.5 +0.3 +1.0 +0.9
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ABI39_RS02110
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