Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS02005 and ABI39_RS02010 are separated by 164 nucleotidesABI39_RS02010 and ABI39_RS02015 are separated by 175 nucleotidesABI39_RS02015 and ABI39_RS02020 are separated by 19 nucleotidesABI39_RS02020 and ABI39_RS02025 are separated by 28 nucleotides ABI39_RS02005: ABI39_RS02005 - DUF5060 domain-containing protein, at 585,511 to 587,115 _RS02005 ABI39_RS02010: ABI39_RS02010 - response regulator, at 587,280 to 591,602 _RS02010 ABI39_RS02015: ABI39_RS02015 - RagB/SusD family nutrient uptake outer membrane protein, at 591,778 to 593,475 _RS02015 ABI39_RS02020: ABI39_RS02020 - TonB-dependent receptor, at 593,495 to 596,764 _RS02020 ABI39_RS02025: ABI39_RS02025 - FecR domain-containing protein, at 596,793 to 597,779 _RS02025
Group Condition ABI39_RS02005 ABI39_RS02010 ABI39_RS02015 ABI39_RS02020 ABI39_RS02025
carbon source Amylopectin from Potato (C) -0.3 +0.1 -0.1 -0.2 -0.5
carbon source Galactan from Potato (C) -0.3 +0.2 -0.1 -0.3 -0.3
carbon source amylopectin from maize (C) -0.2 +0.0 -0.2 -0.2 +0.0
carbon source amylopectin from maize (C) -0.2 +0.1 -0.0 -0.3 +0.0
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.3 +0.0 +0.2 -0.2 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.2 +0.5 -0.0 -0.1 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.2 +0.1 -0.2
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.1 +0.1 -0.1 -0.1 +0.2
carbon source Galactan from Potato (C) -0.1 +0.4 -0.0 -0.1 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.4 -0.2 -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.0 +0.2 +0.2 -0.2 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.3 +0.0 -0.1 +0.0 +0.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.3 -0.0 -0.1 +0.1 +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 +0.1 +0.4 +0.2 -0.1
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.4 +0.1 +0.1 +0.1 -0.1
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.2 +0.1 +0.1 -0.0 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.4 +0.0 +0.0 +0.2 -0.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.2 +0.2 +0.1 -0.0 +0.2
carbon source D-Raffinose 2.5 mg/ml (C) +0.2 +0.0 +0.0 +0.1 +0.3
carbon source (+)-Arabinogalactan (C) +0.2 +0.1 +0.0 +0.0 +0.3
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.0 +0.5 +0.1 -0.0 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.1 +0.2 -0.0 +0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.4 +0.1 +0.2 -0.0 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.1 +0.4 +0.2 +0.3
carbon source Beta-Lactose 2.5 mg/ml (C) +0.4 +0.1 +0.1 +0.1 +0.2
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.3 +0.1 +0.1 +0.1 +0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.2 -0.0 +0.2 +0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 +0.1 +0.1 +0.0 +0.4
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.5 +0.1 -0.0 +0.1 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.1 +0.2 +0.2 +0.4
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