Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS02000 and ABI39_RS02005 are separated by 121 nucleotidesABI39_RS02005 and ABI39_RS02010 are separated by 164 nucleotidesABI39_RS02010 and ABI39_RS02015 are separated by 175 nucleotidesABI39_RS02015 and ABI39_RS02020 are separated by 19 nucleotides ABI39_RS02000: ABI39_RS02000 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 584,775 to 585,389 _RS02000 ABI39_RS02005: ABI39_RS02005 - DUF5060 domain-containing protein, at 585,511 to 587,115 _RS02005 ABI39_RS02010: ABI39_RS02010 - response regulator, at 587,280 to 591,602 _RS02010 ABI39_RS02015: ABI39_RS02015 - RagB/SusD family nutrient uptake outer membrane protein, at 591,778 to 593,475 _RS02015 ABI39_RS02020: ABI39_RS02020 - TonB-dependent receptor, at 593,495 to 596,764 _RS02020
Group Condition ABI39_RS02000 ABI39_RS02005 ABI39_RS02010 ABI39_RS02015 ABI39_RS02020
carbon source Galactan from Potato (C) -0.8 -0.1 +0.4 -0.0 -0.1
carbon source Galactan from Potato (C) -0.0 -0.3 +0.2 -0.1 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.5 -0.2 +0.1 +0.2 +0.1
carbon source NAG 2.5 mg/ml (C) -0.5 +0.1 +0.0 -0.1 +0.1
carbon source Amylopectin from Potato (C) +0.2 -0.3 +0.1 -0.1 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.6 -0.1 +0.1 +0.4 -0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.5 +0.0 +0.1 +0.0 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.6 -0.0 +0.1 +0.2 +0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.8 +0.2 +0.2 -0.0 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.7 -0.2 +0.1 +0.4 +0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.3 +0.0 +0.2 +0.2 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.6 +0.1 +0.1 +0.4 +0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.0 -0.2 +0.5 -0.0 -0.1
carbon source Pectic galactan from potato (C) +0.4 -0.0 +0.1 -0.2 -0.1
carbon source Fructose-6-phosphate (C) +0.2 +0.3 -0.0 -0.2 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.4 -0.0 +0.5 +0.1 -0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.2 +0.1 +0.2 +0.2
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 +0.0 +0.1 -0.1 +0.2
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 -0.2 +0.1 +0.1 +0.2
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.6 +0.1 -0.0 +0.1 -0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.5 -0.0 +0.1 -0.1 +0.3
carbon source N-acetylneuraminic (C) +0.5 +0.3 +0.0 -0.1 +0.1
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.3 +0.3 +0.1 +0.1 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.7 +0.0 +0.1 -0.1 +0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.9 +0.3 +0.0 -0.1 +0.0
carbon source Beta-Lactose 2.5 mg/ml (C) +0.4 +0.4 +0.1 +0.1 +0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.7 +0.4 +0.0 +0.0 +0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +1.0 +0.3 +0.1 +0.1 +0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.9 +0.5 +0.1 -0.0 +0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +1.0 +0.4 +0.1 +0.2 -0.0
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