Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS01370 and ABI39_RS01375 are separated by 6 nucleotidesABI39_RS01375 and ABI39_RS01380 are separated by 14 nucleotidesABI39_RS01380 and ABI39_RS01385 are separated by 38 nucleotidesABI39_RS01385 and ABI39_RS01390 are separated by 185 nucleotides ABI39_RS01370: ABI39_RS01370 - efflux RND transporter periplasmic adaptor subunit, at 421,245 to 422,231 _RS01370 ABI39_RS01375: ABI39_RS01375 - ABC transporter permease, at 422,238 to 423,413 _RS01375 ABI39_RS01380: ABI39_RS01380 - ABC transporter permease, at 423,428 to 424,678 _RS01380 ABI39_RS01385: ABI39_RS01385 - copper resistance protein NlpE, at 424,717 to 425,142 _RS01385 ABI39_RS01390: ABI39_RS01390 - BlaI/MecI/CopY family transcriptional regulator, at 425,328 to 425,693 _RS01390
Group Condition ABI39_RS01370 ABI39_RS01375 ABI39_RS01380 ABI39_RS01385 ABI39_RS01390
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.1 -0.7 -1.0 -0.4 -0.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.5 -0.8 -0.8 -0.8 -0.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.7 -0.0 +0.3 -0.9 -1.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.7 -0.2 -0.5 -0.4 -0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.8 -0.3 -0.2 -0.4 -0.4
carbon source N-acetylneuraminic (C) -0.3 -0.1 +0.0 -0.7 -0.6
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.3 +0.2 -0.2 -0.6 -0.6
carbon source Beta-Lactose 2.5 mg/ml (C) -0.4 -0.4 -0.2 -0.4 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.3 -0.0 -0.4 -0.1 -0.5
carbon source NAG 2.5 mg/ml (C) -0.3 -0.5 -0.2 -0.4 +0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.2 -0.1 -0.8 -0.5
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.5 -0.0 +0.2 -0.3 -0.7
carbon source Amylopectin from Potato (C) -0.1 +0.3 -0.1 -0.7 -0.5
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 +0.3 +0.2 -0.6 -1.0
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.6 +0.2 +0.1 -0.2 -0.3
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.1 -0.2 -0.7
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.4 -0.4 -0.7
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.6 -0.1 -0.1 +0.8 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.6 +0.1 -0.2 +0.4 +0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.1 +0.6 +0.2 +0.0 -0.7
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 +0.2 +0.1 +0.3 -0.8
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.1 +0.3 +0.3 +0.3 -0.7
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.3 +0.5 -0.0 +0.4 -0.2
carbon source D-Galactose (C) +0.2 +0.4 -0.1 +0.3 -0.5
carbon source Galactan from Potato (C) -0.4 +0.2 -0.1 +0.5 +0.4
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.1 +0.4 +0.2 +0.3 -0.5
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.4 +0.5 +0.2 +0.4 -0.1
carbon source amylopectin from maize (C) +0.1 +0.4 +0.0 +0.7 -0.5
carbon source amylopectin from maize (C) -0.3 +0.5 +0.1 +0.7 -0.3
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.2 +0.5 -0.0 +0.5 +0.1
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