Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS01060 and ABI39_RS01065 are separated by 73 nucleotidesABI39_RS01065 and ABI39_RS01070 are separated by 12 nucleotidesABI39_RS01070 and ABI39_RS01075 are separated by 156 nucleotidesABI39_RS01075 and ABI39_RS01080 are separated by 123 nucleotides ABI39_RS01060: ABI39_RS01060 - ABC transporter permease, at 340,408 to 341,649 _RS01060 ABI39_RS01065: ABI39_RS01065 - efflux RND transporter periplasmic adaptor subunit, at 341,723 to 342,817 _RS01065 ABI39_RS01070: ABI39_RS01070 - TolC family protein, at 342,830 to 344,146 _RS01070 ABI39_RS01075: ABI39_RS01075 - hypothetical protein, at 344,303 to 345,256 _RS01075 ABI39_RS01080: ABI39_RS01080 - GntR family transcriptional regulator, at 345,380 to 346,213 _RS01080
Group Condition ABI39_RS01060 ABI39_RS01065 ABI39_RS01070 ABI39_RS01075 ABI39_RS01080
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 -1.1 -0.4 -0.3 +0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.1 -0.4 -0.2 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 -0.1 -0.0 -0.3 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.1 +0.1 -0.3 -0.3 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.3 +0.1 -0.4 -0.0 -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.1 -0.2 -0.4 +0.2 -0.2
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.3 -0.1 +0.1 -0.1 -0.2
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.3 +0.1 -0.3 +0.1 -0.1
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.1 +0.1 -0.1 -0.5 -0.2
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.1 -0.1 -0.2 +0.2 -0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 -0.3 -0.1 -0.4 -0.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.1 +0.2 -0.3 +0.0 -0.2
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.4 -0.3 -0.2 -0.3 +0.2
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.1 +0.2 -0.2 -0.3 -0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 -0.2 -0.2 +0.3 -0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.2 +0.1 -0.2 +0.1 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +0.3 -0.2 +0.2 -0.2
carbon source Amylopectin from Potato (C) -0.1 +0.2 -0.1 +0.4 -0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.5 +0.3 -0.2 -0.0 -0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.3 +0.3 -0.0 -0.2 +0.0
carbon source Beta-Lactose 2.5 mg/ml (C) +0.1 -0.2 -0.0 +0.4 +0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.4 +0.2 -0.2 +0.1 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.1 +0.3 +0.2
carbon source Mucin from porcine stomach type III (C) +0.2 +0.3 +0.1 +0.2 -0.1
carbon source amylopectin from maize (C) +0.2 -0.0 -0.2 +0.4 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.2 +0.4 +0.2 -0.1 +0.0
carbon source Mucin from porcine stomach type III (C) +0.3 +0.3 +0.2 +0.3 -0.2
carbon source Galactan from Potato (C) +0.1 +0.5 +0.2 +0.1 -0.1
carbon source Galactan from Potato (C) +0.6 +0.3 +0.2 +0.2 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.2 +0.7 +0.1 +0.3 -0.0
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ABI39_RS01060
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