Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS00940 and ABI39_RS00950 are separated by 366 nucleotidesABI39_RS00950 and ABI39_RS00955 are separated by 31 nucleotidesABI39_RS00955 and ABI39_RS00960 are separated by 90 nucleotidesABI39_RS00960 and ABI39_RS00965 are separated by 241 nucleotides ABI39_RS00940: ABI39_RS00940 - phage integrase SAM-like domain-containing protein, at 300,961 to 302,133 _RS00940 ABI39_RS00950: ABI39_RS00950 - TonB-dependent receptor, at 302,500 to 305,652 _RS00950 ABI39_RS00955: ABI39_RS00955 - RagB/SusD family nutrient uptake outer membrane protein, at 305,684 to 307,822 _RS00955 ABI39_RS00960: ABI39_RS00960 - hypothetical protein, at 307,913 to 308,230 _RS00960 ABI39_RS00965: ABI39_RS00965 - family 78 glycoside hydrolase catalytic domain, at 308,472 to 310,253 _RS00965
Group Condition ABI39_RS00940 ABI39_RS00950 ABI39_RS00955 ABI39_RS00960 ABI39_RS00965
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.9 -0.3 -0.1 -0.4 +0.1
carbon source Galactan from Potato (C) -0.7 -0.2 -0.1 -0.3 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.7 -0.2 -0.2 -0.5 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.9 -0.2 -0.3 -0.2 +0.2
carbon source Galactan from Potato (C) -0.8 -0.3 -0.1 -0.4 +0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.6 +0.0 +0.3 -0.6 -0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.4 -0.2 +0.2 -0.6 +0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.3 -0.2 +0.1 -0.2 -0.4
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.1 -0.1 -0.2 -0.2 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 -0.2 -0.0 -0.1 -0.3
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.3 -0.2 -0.1 -0.1 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 -0.1 -0.1 -0.1 -0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.5 -0.1 -0.0 -0.2 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.6 -0.1 +0.0 -0.1 +0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.5 -0.1 +0.0 -0.4 +0.4
carbon source Fructose-6-phosphate (C) -0.1 -0.0 -0.2 -0.5 +0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 -0.1 -0.2 +0.5 -0.1
carbon source Red Arabinan from sugar-beet (C) -0.1 -0.2 -0.0 -0.2 +0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.2 -0.2 -0.1 -0.1 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.5 -0.0 +0.0 -0.1 +0.3
carbon source Pectic galactan from potato (C) -0.1 -0.1 -0.1 -0.2 +0.4
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.3 -0.1 +0.0 -0.0 +0.3
carbon source beta-Cyclodextrin (C) -0.1 -0.0 +0.1 -0.3 +0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.2 +0.3 -0.1
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.1 -0.1 +0.1 +0.2 +0.3
carbon source amylopectin from maize (C) +0.1 +0.1 -0.1 +0.5 -0.0
carbon source NAG 2.5 mg/ml (C) -0.0 -0.1 +0.2 +0.3 +0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 -0.1 +0.1 +0.2 +0.3
carbon source Amylopectin from Potato (C) +0.1 -0.1 +0.1 +0.4 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 -0.1 +0.0 +0.4 +0.4
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