Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS00700 and ABI39_RS00705 are separated by 4 nucleotidesABI39_RS00705 and ABI39_RS00710 are separated by 172 nucleotidesABI39_RS00710 and ABI39_RS00715 are separated by 28 nucleotidesABI39_RS00715 and ABI39_RS00720 are separated by 107 nucleotides ABI39_RS00700: ABI39_RS00700 - glycoside hydrolase family 97 protein, at 214,024 to 215,958 _RS00700 ABI39_RS00705: ABI39_RS00705 - endopolygalacturonase, at 215,963 to 217,465 _RS00705 ABI39_RS00710: ABI39_RS00710 - RagB/SusD family nutrient uptake outer membrane protein, at 217,638 to 219,491 _RS00710 ABI39_RS00715: ABI39_RS00715 - TonB-dependent receptor, at 219,520 to 222,600 _RS00715 ABI39_RS00720: ABI39_RS00720 - alginate lyase family protein, at 222,708 to 224,297 _RS00720
Group Condition ABI39_RS00700 ABI39_RS00705 ABI39_RS00710 ABI39_RS00715 ABI39_RS00720
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.2 +0.1 +0.0 -0.2 -0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.1 +0.1 -0.1 -0.1 -0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.0 +0.2 -0.3 -0.1 -0.3
carbon source amylopectin from maize (C) -0.2 -0.0 +0.1 -0.1 -0.3
carbon source Amylopectin from Potato (C) +0.1 -0.2 -0.3 -0.0 +0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.1 -0.2 -0.3
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.1 +0.0 +0.2 -0.2 -0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 +0.1 -0.1 -0.2 -0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.0 +0.2 -0.0 -0.1 -0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.2 +0.0 +0.3 -0.2 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 +0.2 -0.3 -0.0 -0.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.0 +0.4 -0.3 -0.1 -0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.2 -0.1 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.2 +0.2 -0.2 -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 +0.2 -0.2 -0.2 -0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 +0.3 +0.1 -0.1 -0.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.2 -0.1 -0.3
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.1 -0.2 -0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 +0.3 +0.3 -0.2 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +0.5 -0.4 -0.1 -0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.1 +0.1 -0.0 -0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.1 -0.0 +0.3 -0.2 -0.0
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.2 +0.3 +0.5 -0.2 -0.3
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.2 +0.0 -0.2 +0.1 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.3 +0.5 -0.3 -0.3
carbon source D-Fructose 2.5 mg/ml (C) +0.2 +0.2 +0.1 +0.1 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.3 +0.9 -0.2 -0.2 -0.2
carbon source D-Glucose 2.5 mg/ml (C) +0.1 +0.3 +0.2 +0.1 -0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 +0.5 +0.2 -0.0 +0.0
carbon source D-Glucose 2.5 mg/ml (C) +0.2 +0.3 +0.3 +0.1 +0.2
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ABI39_RS00700
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ABI39_RS00705
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