Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS00550 and ABI39_RS00555 are separated by 33 nucleotidesABI39_RS00555 and ABI39_RS00560 are separated by 211 nucleotidesABI39_RS00560 and ABI39_RS00565 are separated by 16 nucleotidesABI39_RS00565 and ABI39_RS00570 are separated by 154 nucleotides ABI39_RS00550: ABI39_RS00550 - M56 family metallopeptidase, at 153,110 to 154,996 _RS00550 ABI39_RS00555: ABI39_RS00555 - BlaI/MecI/CopY family transcriptional regulator, at 155,030 to 155,392 _RS00555 ABI39_RS00560: ABI39_RS00560 - glycoside hydrolase family 88 protein, at 155,604 to 156,827 _RS00560 ABI39_RS00565: ABI39_RS00565 - glycosyl hydrolase 43 family protein, at 156,844 to 158,493 _RS00565 ABI39_RS00570: ABI39_RS00570 - glycoside hydrolase family 97 protein, at 158,648 to 160,585 _RS00570
Group Condition ABI39_RS00550 ABI39_RS00555 ABI39_RS00560 ABI39_RS00565 ABI39_RS00570
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 -1.3 +0.1 -0.6 -0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.3 +0.0 -0.2 -0.7 -0.3
carbon source amylopectin from maize (C) -0.2 -0.4 -0.2 -0.3 -0.3
carbon source D-Fructose 2.5 mg/ml (C) -0.2 -0.4 -0.4 -0.2 -0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.3 -0.3 -0.1 -0.4 -0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.1 -0.8 +0.0 -0.3 -0.2
carbon source D-Glucose 2.5 mg/ml (C) -0.3 -0.3 -0.2 -0.1 -0.2
carbon source D-Glucose 2.5 mg/ml (C) -0.3 +0.1 -0.3 -0.2 -0.3
carbon source D-Galactose 2.5 mg/ml (C) -0.1 -0.3 -0.3 -0.0 -0.2
carbon source amylopectin from maize (C) -0.0 -0.3 -0.2 -0.4 -0.1
carbon source D-Fructose 2.5 mg/ml (C) -0.2 -0.2 -0.4 -0.1 -0.2
carbon source D-Mannose 2.5 mg/ml (C) -0.0 -0.1 -0.2 -0.2 -0.3
carbon source polygalacturonic (ultrapure) (C) -0.2 -0.3 -0.2 -0.1 -0.0
carbon source D-Galactose (C) -0.1 -0.7 +0.1 +0.0 -0.2
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) -0.2 +0.3 -0.1 -0.2 -0.2
carbon source Inulin from chicory; autoclaved 2.5 mg/ml (C) -0.0 +0.4 -0.2 -0.2 -0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.2 +0.6 +0.1 -0.4 -0.2
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.0 +0.4 +0.1 -0.2 -0.3
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.1 +0.6 +0.1 -0.2 -0.2
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.1 +0.6 +0.1 -0.2 -0.1
carbon source Galactan from Potato (C) +0.1 +0.6 +0.0 -0.3 -0.0
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.1 +0.5 -0.3 -0.0 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 -0.4 +0.4 +0.2 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +1.0 -0.1 -0.2 -0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.2 +0.5 +0.1 -0.1 -0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.1 +0.5 +0.0 +0.3 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +0.5 +0.1 -0.0 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.1 +0.3 +0.4 +0.2 -0.2
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.0 +0.9 -0.1 +0.1 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.4 +0.7 +0.0 -0.0 +0.0
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