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Cofit
Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS00550 and ABI39_RS00555 are separated by 33 nucleotides
ABI39_RS00555 and ABI39_RS00560 are separated by 211 nucleotides
ABI39_RS00560 and ABI39_RS00565 are separated by 16 nucleotides
ABI39_RS00565 and ABI39_RS00570 are separated by 154 nucleotides
ABI39_RS00550: ABI39_RS00550 - M56 family metallopeptidase, at 153,110 to 154,996
_RS00550
ABI39_RS00555: ABI39_RS00555 - BlaI/MecI/CopY family transcriptional regulator, at 155,030 to 155,392
_RS00555
ABI39_RS00560: ABI39_RS00560 - glycoside hydrolase family 88 protein, at 155,604 to 156,827
_RS00560
ABI39_RS00565: ABI39_RS00565 - glycosyl hydrolase 43 family protein, at 156,844 to 158,493
_RS00565
ABI39_RS00570: ABI39_RS00570 - glycoside hydrolase family 97 protein, at 158,648 to 160,585
_RS00570
Group
Condition
ABI39
_RS00550
ABI39
_RS00555
ABI39
_RS00560
ABI39
_RS00565
ABI39
_RS00570
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.2
-1.3
+0.1
-0.6
-0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.3
+0.0
-0.2
-0.7
-0.3
carbon source
amylopectin from maize (C)
-0.2
-0.4
-0.2
-0.3
-0.3
carbon source
D-Fructose 2.5 mg/ml (C)
-0.2
-0.4
-0.4
-0.2
-0.2
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.3
-0.3
-0.1
-0.4
-0.1
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.1
-0.8
+0.0
-0.3
-0.2
carbon source
D-Glucose 2.5 mg/ml (C)
-0.3
-0.3
-0.2
-0.1
-0.2
carbon source
D-Glucose 2.5 mg/ml (C)
-0.3
+0.1
-0.3
-0.2
-0.3
carbon source
D-Galactose 2.5 mg/ml (C)
-0.1
-0.3
-0.3
-0.0
-0.2
carbon source
amylopectin from maize (C)
-0.0
-0.3
-0.2
-0.4
-0.1
carbon source
D-Fructose 2.5 mg/ml (C)
-0.2
-0.2
-0.4
-0.1
-0.2
carbon source
D-Mannose 2.5 mg/ml (C)
-0.0
-0.1
-0.2
-0.2
-0.3
carbon source
polygalacturonic (ultrapure) (C)
-0.2
-0.3
-0.2
-0.1
-0.0
carbon source
D-Galactose (C)
-0.1
-0.7
+0.1
+0.0
-0.2
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
-0.2
+0.3
-0.1
-0.2
-0.2
carbon source
Inulin from chicory; autoclaved 2.5 mg/ml (C)
-0.0
+0.4
-0.2
-0.2
-0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.2
+0.6
+0.1
-0.4
-0.2
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.0
+0.4
+0.1
-0.2
-0.3
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.1
+0.6
+0.1
-0.2
-0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
-0.1
+0.6
+0.1
-0.2
-0.1
carbon source
Galactan from Potato (C)
+0.1
+0.6
+0.0
-0.3
-0.0
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
+0.1
+0.5
-0.3
-0.0
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
-0.4
+0.4
+0.2
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+1.0
-0.1
-0.2
-0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.2
+0.5
+0.1
-0.1
-0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.1
+0.5
+0.0
+0.3
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
+0.5
+0.1
-0.0
-0.1
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.1
+0.3
+0.4
+0.2
-0.2
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.0
+0.9
-0.1
+0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.4
+0.7
+0.0
-0.0
+0.0
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