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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS00445 and ABI39_RS00450 are separated by 56 nucleotides
ABI39_RS00450 and ABI39_RS00455 are separated by 108 nucleotides
ABI39_RS00455 and ABI39_RS00460 are separated by 18 nucleotides
ABI39_RS00460 and ABI39_RS00465 overlap by 14 nucleotides
ABI39_RS00445: ABI39_RS00445 - endonuclease/exonuclease/phosphatase family protein, at 127,290 to 128,321
_RS00445
ABI39_RS00450: ABI39_RS00450 - family 20 glycosylhydrolase, at 128,378 to 130,684
_RS00450
ABI39_RS00455: ABI39_RS00455 - hypothetical protein, at 130,793 to 131,284
_RS00455
ABI39_RS00460: ABI39_RS00460 - hypothetical protein, at 131,303 to 131,524
_RS00460
ABI39_RS00465: ABI39_RS00465 - carbon starvation protein A, at 131,511 to 132,941
_RS00465
Group
Condition
ABI39
_RS00445
ABI39
_RS00450
ABI39
_RS00455
ABI39
_RS00460
ABI39
_RS00465
carbon source
D-Galactose (C)
-0.1
-0.2
-0.6
-0.2
+0.0
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.2
-0.1
-0.5
-0.3
+0.0
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.2
-0.3
-0.6
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.4
+0.1
-0.7
-0.5
-0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
-0.2
-0.2
-0.4
-0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.3
-0.0
+0.3
-0.5
-0.3
carbon source
Galactose 1-phosphate dipotassium salt (C)
+0.0
+0.1
-0.5
-0.3
-0.1
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.2
+0.2
-0.2
-0.6
-0.0
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.4
-1.0
-0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.0
+0.2
-0.7
-0.3
+0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.5
+0.2
+0.2
-0.3
+0.0
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
-0.4
-0.0
-0.2
+0.3
carbon source
Fructose-6-phosphate (C)
+0.1
+0.3
-0.6
-0.3
+0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.4
+0.2
-0.8
+0.3
+0.2
carbon source
Mucin from porcine stomach type III (C)
+0.2
+0.2
-0.1
-0.3
-0.2
carbon source
amylopectin from maize (C)
+0.2
+0.4
-0.5
-0.1
-0.1
carbon source
Galactan from Potato (C)
+0.1
+0.6
-0.9
+0.3
-0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
-0.4
+0.5
-0.1
+0.2
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.4
-0.0
+0.1
+0.5
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.3
+0.1
+0.5
-0.4
+0.2
carbon source
Xylan from corn core; autoclaved 2.5 mg/ml (C)
-0.2
-0.1
+0.5
-0.2
+0.0
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.1
+0.0
+0.4
-0.4
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.0
-0.1
-0.4
+0.6
+0.0
carbon source
Galactan from Potato (C)
+0.1
+0.5
-0.8
+0.8
-0.4
carbon source
amylopectin from maize (C)
+0.1
+0.2
-0.4
+0.6
-0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.3
+0.2
+0.4
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.2
+0.4
+0.4
-0.2
+0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.4
+0.1
+0.8
-0.2
+0.1
carbon source
D-Glucose 2.5 mg/ml (C)
-0.2
-0.1
+0.4
+0.3
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.0
+0.5
+0.3
-0.3
+0.1
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