Fitness for 5 genes in Escherichia coli BW25113

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500 ntsgcE and sgcA are separated by 11 nucleotidessgcA and ryjB overlap by 4 nucleotidesryjB and sgcQ are separated by 44 nucleotidessgcQ and sgcC are separated by 12 nucleotides b4301: sgcE - ribulose-phosphate 3-epimerase (NCBI), at 4,524,928 to 4,525,560 sgcE b4302: sgcA - KpLE2 phage-like element; predicted phosphotransferase enzyme IIA component (NCBI), at 4,525,572 to 4,526,003 sgcA b4624: ryjB - Novel sRNA, function unknown (RefSeq), at 4,526,000 to 4,526,089 ryjB b4303: sgcQ - KpLE2 phage-like element; predicted nucleoside triphosphatase (NCBI), at 4,526,134 to 4,526,940 sgcQ b4304: sgcC - KpLE2 phage-like element; predicted phosphotransferase enzyme IIC component (NCBI), at 4,526,953 to 4,528,266 sgcC
Group Condition b4301 b4302 b4624 b4303 b4304
sgcE sgcA ryjB sgcQ sgcC
carbon source carbon source D-Glucose 5mM -0.0 -1.0 N.D. -0.7 -0.1
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.7 -0.1 N.D. -0.1 -0.7
phage Papa dilution 10-1 cacl2 maltose -0.5 -0.5 N.D. -0.2 -0.3
phage T7_phage 0.00015625 MOI TC4 -0.7 -0.3 N.D. -0.3 -0.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.1 +0.1 N.D. -0.5 -0.7
phage Bas60 -0.6 -0.1 N.D. -0.3 -0.2
nophagecontrol R1_N4_T1_phage0 -0.4 -0.5 N.D. -0.3 +0.1
phage Δdbn_10 -0.0 -0.0 N.D. -1.1 +0.1
phage T7_phage 0.00015625 MOI TC3 -0.5 -0.3 N.D. -0.1 -0.2
phage T7_phage 0.0015625 MOI TC2 +0.2 -0.2 N.D. -0.7 -0.2
stress 3-methyl-1-butanol 1.25 vol% -0.6 +0.1 N.D. -0.4 -0.2
stress Cisplatin 0.1 mg/ml -0.5 -0.7 N.D. +0.5 +0.1
gfp_control GFP_control -0.7 +0.2 N.D. +0.1 -0.2
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.3 +0.3 N.D. -0.3 -0.2
mzaabcde mzaABCDE -0.4 +0.4 N.D. -0.1 -0.2
drt_type_3 DRT_type_3 -0.4 +0.4 N.D. +0.1 -0.2
phage Ste41 +0.4 +0.3 N.D. -0.7 +0.1
phage R2_N4_T1_phage10 -0.1 +0.4 N.D. -0.4 +0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.3 +0.4 N.D. -0.3 +0.3
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM +0.3 -0.5 N.D. +0.1 +0.2
phage RB68 +0.3 +0.4 N.D. -0.3 -0.2
control PBS_cage_1_mice _Feces_16 hr +0.5 +0.3 N.D. -0.5 +0.0
motility inner cut, LB soft agar motility assay +0.2 -0.4 N.D. +0.4 +0.2
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -0.6 +0.3 N.D. +0.8 -0.1
motility outer cut, LB soft agar motility assay +0.3 +0.6 N.D. -0.3 -0.0
control PBS_cage_2_mouse_3_Cecum_40 hr +0.6 -0.4 N.D. +0.4 +0.1
phage TP4 +0.3 +0.4 N.D. +0.3 -0.2
motility inner cut, LB soft agar motility assay +0.4 -0.2 N.D. +0.6 +0.2
motility inner cut, LB soft agar motility assay +0.8 -0.3 N.D. +0.5 +0.1
phage Koxy_10 +0.3 +0.3 N.D. +0.4 +0.3
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