Fitness for 5 genes in Escherichia coli BW25113

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500 ntinsC and insD-6 overlap by 43 nucleotidesinsD-6 and yjgX are separated by 92 nucleotidesyjgX and yjgZ are separated by 468 nucleotidesyjgZ and insG are separated by 513 nucleotides b4272: insC - KpLE2 phage-like element; IS2 insertion element repressor InsA (RefSeq), at 4,496,295 to 4,496,660 insC b4273: insD-6 - KpLE2 phage-like element; IS2 insertion element transposase InsAB' (NCBI), at 4,496,618 to 4,497,523 insD-6 b4575: yjgX - no description, at 4,497,616 to 4,498,814 yjgX b4277: yjgZ - KpLE2 phage-like element; predicted protein (NCBI), at 4,499,283 to 4,499,612 yjgZ b4278: insG - KpLE2 phage-like element; IS4 predicted transposase (NCBI), at 4,500,126 to 4,501,454 insG
Group Condition b4272 b4273 b4575 b4277 b4278
insC insD-6 yjgX yjgZ insG
stress Ciprofloxacin Hydrochloride 0.0003 mM N.D. N.D. -0.0 -1.0 -0.4
gfp_control GFP_control N.D. N.D. -0.4 -0.2 -0.6
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM N.D. N.D. +0.1 -1.1 -0.3
mzaabcde mzaABCDE N.D. N.D. -0.2 -0.5 -0.4
phage N4_phage 0.009375 MOI TC2 N.D. N.D. -0.1 -0.7 -0.1
carbon source carbon source D-Mannose 1mM N.D. N.D. -0.0 -0.9 +0.1
carbon source carbon source D-Mannose 5mM N.D. N.D. -0.1 -0.8 +0.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. N.D. -0.3 +0.1 -0.6
control PBS_cage_1_mice _Feces_22 hr N.D. N.D. -0.2 -0.6 +0.2
control PBS_cage_1_mice _Feces_16 hr N.D. N.D. -0.1 -0.7 +0.4
phage HSDP3 N.D. N.D. +0.2 -0.6 +0.1
mzaabcde mzaABCDE N.D. N.D. -0.3 +0.3 -0.4
phage T7_phage 0.00015625 MOI TC4 N.D. N.D. +0.0 -0.5 +0.5
control PBS_cage_2_mouse_1_Cecum_40 hr N.D. N.D. -0.1 +0.6 -0.2
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM N.D. N.D. -0.3 +0.7 -0.0
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM N.D. N.D. +0.1 +0.7 -0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. N.D. -0.1 +0.8 -0.1
stress Chloramphenicol 0.005 mg/ml N.D. N.D. +0.2 +0.7 -0.1
stress Vanillin 5 mM N.D. N.D. +0.2 +0.7 -0.1
stress Cholin acetate 75 mM N.D. N.D. +0.1 +0.7 +0.0
stress octanol 0.08 vol% N.D. N.D. -0.2 +0.3 +0.8
stress 5-Hydroxymethylfurfural 20 mM N.D. N.D. +0.1 +0.8 +0.0
stress Aluminum chloride 5 mM N.D. N.D. +0.2 +0.8 +0.0
stress Cisplatin 0.1 mg/ml N.D. N.D. +0.0 +1.0 -0.0
stress Nickel (II) chloride 1 mM N.D. N.D. +0.1 +0.8 +0.2
stress Bacitracin 1 mg/ml N.D. N.D. +0.2 +1.1 +0.1
phage RB68 N.D. N.D. +0.4 +0.5 +0.6
phage Ste41 N.D. N.D. +0.6 +0.6 +0.5
phage RB68 N.D. N.D. +0.5 +0.5 +0.7
phage Ste41 N.D. N.D. +0.6 +0.8 +0.8
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