Fitness for 5 genes in Escherichia coli BW25113

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500 ntrpmH and rnpA are separated by 16 nucleotidesrnpA and yidD overlap by 37 nucleotidesyidD and yidC are separated by 2 nucleotidesyidC and trmE are separated by 105 nucleotides b3703: rpmH - 50S ribosomal protein L34 (NCBI), at 3,882,359 to 3,882,499 rpmH b3704: rnpA - ribonuclease P (NCBI), at 3,882,516 to 3,882,875 rnpA b4557: yidD - hypothetical protein (NCBI), at 3,882,839 to 3,883,096 yidD b3705: yidC - inner membrane protein translocase component YidC (NCBI), at 3,883,099 to 3,884,745 yidC b3706: trmE - tRNA modification GTPase (NCBI), at 3,884,851 to 3,886,215 trmE
Group Condition b3703 b3704 b4557 b3705 b3706
rpmH rnpA yidD yidC trmE
sulfur source M63 no sulfur + 5 mM sulfate N.D. N.D. -0.2 N.D. -4.3
sulfur source M63 no sulfur + 5 mM L-cys N.D. N.D. -0.1 N.D. -4.4
control PBS_cage_2_mouse_1_Cecum_40 hr N.D. N.D. -0.8 N.D. -3.7
control PBS_cage_2_mouse_2_Cecum_40 hr N.D. N.D. -0.2 N.D. -4.3
stress 2,4-Dinitrophenol 2 mM N.D. N.D. -0.3 N.D. -4.1
stress 2,4-Dinitrophenol 2 mM N.D. N.D. -0.2 N.D. -4.2
sulfur source M63 no sulfur + 5 mM sulfate N.D. N.D. +0.3 N.D. -4.3
nitrogen source Putrescine (N) N.D. N.D. +0.1 N.D. -4.1
stress toluene 2.5 vol% N.D. N.D. -0.7 N.D. -3.3
nitrogen source Gly-DL-Asp (N) N.D. N.D. -0.6 N.D. -3.3
nitrogen source Putrescine (N) N.D. N.D. +0.0 N.D. -3.9
phage Phage_N4_cage_3_mice _Feces_22 hr N.D. N.D. -0.0 N.D. -3.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. N.D. -1.3 N.D. -2.5
carbon source D-Serine (C) N.D. N.D. -0.1 N.D. -3.7
motility inner cut, LB soft agar motility assay N.D. N.D. -2.3 N.D. -1.5
carbon source Dodecanol (C) N.D. N.D. -1.0 N.D. -2.7
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr N.D. N.D. -0.1 N.D. -3.6
sulfur source M63 no sulfur + 5 mM L-cys N.D. N.D. -0.1 N.D. -3.6
carbon source Dodecanol and Rhamnolipid (C) N.D. N.D. +0.1 N.D. -3.7
carbon source Dodecanol and Rhamnolipid (C) N.D. N.D. +0.2 N.D. -3.7
phage Phage_N4_cage_3_mice _Feces_40 hr N.D. N.D. +0.3 N.D. -3.7
nitrogen source Glycine (N) N.D. N.D. +0.3 N.D. -3.6
plasmid transformation mariner vector transformation; liquid outgrowth assay N.D. N.D. -4.0 N.D. +0.8
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr N.D. N.D. +0.8 N.D. -3.5
stress Cobalt chloride 0.32 mM N.D. N.D. +0.7 N.D. -2.9
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. N.D. -3.3 N.D. +2.2
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. N.D. -2.3 N.D. +1.5
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. N.D. -2.6 N.D. +3.1
stress Benzalkonium Chloride 0.004 mg/ml N.D. N.D. -2.9 N.D. +4.1
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. N.D. -1.3 N.D. +2.4
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