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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
dgoA and dgoK overlap by 17 nucleotides
dgoK and dgoR overlap by 4 nucleotides
dgoR and yidX are separated by 277 nucleotides
yidX and yidA are separated by 45 nucleotides
b4477: dgoA - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI), at 3,871,018 to 3,871,635
dgoA
b3693: dgoK - 2-oxo-3-deoxygalactonate kinase (NCBI), at 3,871,619 to 3,872,497
dgoK
b4479: dgoR - predicted DNA-binding transcriptional regulator (NCBI), at 3,872,494 to 3,873,183
dgoR
b3696: yidX - predicted lipoproteinC (NCBI), at 3,873,461 to 3,874,117
yidX
b3697: yidA - predicted hydrolase (NCBI), at 3,874,163 to 3,874,975
yidA
Group
Condition
b4477
b3693
b4479
b3696
b3697
dgoA
dgoK
dgoR
yidX
yidA
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
-2.9
-0.1
-0.4
+0.2
+0.0
phage
T7_phage 0.00015625 MOI TC4
-0.9
-0.2
-1.5
-0.0
-0.2
control
PBS_cage_1_mouse_1_Cecum_40 hr
-2.4
-0.1
-0.3
-0.2
+0.2
phage
Phage_N4_cage_4_mouse_2_Cecum_40 hr
-1.9
-0.2
-0.1
-0.1
-0.1
phage
Ste41
-0.3
-0.5
-1.0
-0.1
-0.3
phage
Phage_N4_cage_4_mice _Feces_40 hr
-1.6
-0.1
-0.2
-0.0
+0.1
phage
Phage_N4_cage_4_mouse_3_Cecum_40 hr
-1.8
-0.2
-0.1
-0.0
+0.1
control
PBS_cage_2_mice _Feces_40 hr
-2.3
+0.1
+0.1
-0.0
+0.2
motility
outer cut, LB soft agar motility assay
-0.3
-0.2
-1.1
+0.0
-0.3
phage
RB68
-0.7
-0.5
-0.6
+0.2
-0.2
control
PBS_cage_1_mice _Feces_22 hr
-1.5
+0.1
-0.4
+0.2
-0.0
phage
Phage_N4_cage_3_mice _Feces_16 hr
-1.7
-0.0
-0.2
+0.2
+0.0
phage
Phage_N4_cage_3_mouse_2_Cecum_40 hr
-1.5
+0.1
-0.2
+0.2
-0.1
control
PBS_cage_1_mouse_2_Cecum_40 hr
-1.3
-0.5
-0.2
+0.2
+0.3
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.8
-0.2
-0.6
-0.2
+0.3
control
PBS_cage_2_mice _Feces_22 hr
-1.6
-0.0
+0.2
+0.1
-0.1
control
PBS_cage_2_mouse_3_Cecum_40 hr
-1.9
+0.1
-0.0
+0.2
+0.1
phage
Phage_N4_cage_3_mouse_1_Cecum_40 hr
-1.3
-0.2
-0.2
+0.3
+0.0
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-1.2
-0.6
+0.2
+0.3
-0.2
phage
Phage_N4_cage_3_mice _Feces_22 hr
-1.4
-0.1
-0.2
+0.3
+0.0
control
PBS_cage_2_mice _Feces_16 hr
-1.8
+0.2
+0.1
+0.1
+0.0
stress
Chlorite 1.25 mM
-1.2
-0.0
-0.4
+0.4
-0.0
carbon source
carbon source D-Glucose 0.25mM
-1.9
+0.1
+0.6
+0.1
-0.2
phage
Phage_N4_cage_3_mice _Feces_40 hr
-1.4
+0.0
-0.3
+0.1
+0.2
control
PBS_cage_1_mice _Feces_40 hr
-1.1
-0.1
-0.3
+0.3
+0.2
control
PBS_cage_2_mouse_1_Cecum_40 hr
-1.5
+0.3
+0.0
+0.0
+0.2
control
PBS_cage_2_mouse_2_Cecum_40 hr
-1.2
+0.2
-0.1
+0.3
+0.2
phage
T7_phage 0.00015625 MOI TC3
-0.2
-0.5
-0.1
+0.4
+0.7
stress
Ciprofloxacin Hydrochloride 0.0003 mM
+0.8
+0.4
+0.4
+0.3
+0.2
phage
Papa dilution 10-1 cacl2 maltose
+1.1
+1.0
+0.0
-0.1
+0.2
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