Fitness for 5 genes in Escherichia coli BW25113

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500 ntdgoA and dgoK overlap by 17 nucleotidesdgoK and dgoR overlap by 4 nucleotidesdgoR and yidX are separated by 277 nucleotidesyidX and yidA are separated by 45 nucleotides b4477: dgoA - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI), at 3,871,018 to 3,871,635 dgoA b3693: dgoK - 2-oxo-3-deoxygalactonate kinase (NCBI), at 3,871,619 to 3,872,497 dgoK b4479: dgoR - predicted DNA-binding transcriptional regulator (NCBI), at 3,872,494 to 3,873,183 dgoR b3696: yidX - predicted lipoproteinC (NCBI), at 3,873,461 to 3,874,117 yidX b3697: yidA - predicted hydrolase (NCBI), at 3,874,163 to 3,874,975 yidA
Group Condition b4477 b3693 b4479 b3696 b3697
dgoA dgoK dgoR yidX yidA
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -2.9 -0.1 -0.4 +0.2 +0.0
phage T7_phage 0.00015625 MOI TC4 -0.9 -0.2 -1.5 -0.0 -0.2
control PBS_cage_1_mouse_1_Cecum_40 hr -2.4 -0.1 -0.3 -0.2 +0.2
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr -1.9 -0.2 -0.1 -0.1 -0.1
phage Ste41 -0.3 -0.5 -1.0 -0.1 -0.3
phage Phage_N4_cage_4_mice _Feces_40 hr -1.6 -0.1 -0.2 -0.0 +0.1
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr -1.8 -0.2 -0.1 -0.0 +0.1
control PBS_cage_2_mice _Feces_40 hr -2.3 +0.1 +0.1 -0.0 +0.2
motility outer cut, LB soft agar motility assay -0.3 -0.2 -1.1 +0.0 -0.3
phage RB68 -0.7 -0.5 -0.6 +0.2 -0.2
control PBS_cage_1_mice _Feces_22 hr -1.5 +0.1 -0.4 +0.2 -0.0
phage Phage_N4_cage_3_mice _Feces_16 hr -1.7 -0.0 -0.2 +0.2 +0.0
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr -1.5 +0.1 -0.2 +0.2 -0.1
control PBS_cage_1_mouse_2_Cecum_40 hr -1.3 -0.5 -0.2 +0.2 +0.3
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.8 -0.2 -0.6 -0.2 +0.3
control PBS_cage_2_mice _Feces_22 hr -1.6 -0.0 +0.2 +0.1 -0.1
control PBS_cage_2_mouse_3_Cecum_40 hr -1.9 +0.1 -0.0 +0.2 +0.1
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -1.3 -0.2 -0.2 +0.3 +0.0
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -1.2 -0.6 +0.2 +0.3 -0.2
phage Phage_N4_cage_3_mice _Feces_22 hr -1.4 -0.1 -0.2 +0.3 +0.0
control PBS_cage_2_mice _Feces_16 hr -1.8 +0.2 +0.1 +0.1 +0.0
stress Chlorite 1.25 mM -1.2 -0.0 -0.4 +0.4 -0.0
carbon source carbon source D-Glucose 0.25mM -1.9 +0.1 +0.6 +0.1 -0.2
phage Phage_N4_cage_3_mice _Feces_40 hr -1.4 +0.0 -0.3 +0.1 +0.2
control PBS_cage_1_mice _Feces_40 hr -1.1 -0.1 -0.3 +0.3 +0.2
control PBS_cage_2_mouse_1_Cecum_40 hr -1.5 +0.3 +0.0 +0.0 +0.2
control PBS_cage_2_mouse_2_Cecum_40 hr -1.2 +0.2 -0.1 +0.3 +0.2
phage T7_phage 0.00015625 MOI TC3 -0.2 -0.5 -0.1 +0.4 +0.7
stress Ciprofloxacin Hydrochloride 0.0003 mM +0.8 +0.4 +0.4 +0.3 +0.2
phage Papa dilution 10-1 cacl2 maltose +1.1 +1.0 +0.0 -0.1 +0.2
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