Fitness for 5 genes in Escherichia coli BW25113

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500 ntdgoT and dgoD are separated by 119 nucleotidesdgoD and dgoA overlap by 4 nucleotidesdgoA and dgoK overlap by 17 nucleotidesdgoK and dgoR overlap by 4 nucleotides b3691: dgoT - D-galactonate transport (VIMSS), at 3,868,461 to 3,869,753 dgoT b4478: dgoD - galactonate dehydratase (NCBI), at 3,869,873 to 3,871,021 dgoD b4477: dgoA - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI), at 3,871,018 to 3,871,635 dgoA b3693: dgoK - 2-oxo-3-deoxygalactonate kinase (NCBI), at 3,871,619 to 3,872,497 dgoK b4479: dgoR - predicted DNA-binding transcriptional regulator (NCBI), at 3,872,494 to 3,873,183 dgoR
Group Condition b3691 b4478 b4477 b3693 b4479
dgoT dgoD dgoA dgoK dgoR
phage T7_phage 0.00015625 MOI TC4 -0.3 -0.4 -0.9 -0.2 -1.5
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.1 +0.1 -2.9 -0.1 -0.4
phage RB68 -0.5 -0.7 -0.7 -0.5 -0.6
control PBS_cage_1_mouse_1_Cecum_40 hr +0.3 -0.3 -2.4 -0.1 -0.3
phage Ste41 -0.5 -0.2 -0.3 -0.5 -1.0
control PBS_cage_2_mice _Feces_40 hr +0.0 -0.3 -2.3 +0.1 +0.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.2 -0.6 -0.8 -0.2 -0.6
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.2 -0.4 -1.9 -0.2 -0.1
control PBS_cage_1_mice _Feces_22 hr +0.1 -0.5 -1.5 +0.1 -0.4
phage Phage_N4_cage_4_mice _Feces_40 hr +0.0 -0.2 -1.6 -0.1 -0.2
control PBS_cage_1_mouse_2_Cecum_40 hr -0.2 +0.0 -1.3 -0.5 -0.2
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.1 -0.2 -1.8 -0.2 -0.1
control PBS_cage_2_mouse_3_Cecum_40 hr -0.1 -0.3 -1.9 +0.1 -0.0
motility outer cut, LB soft agar motility assay -0.0 -0.4 -0.3 -0.2 -1.1
control PBS_cage_2_mouse_1_Cecum_40 hr -0.4 -0.4 -1.5 +0.3 +0.0
phage Phage_N4_cage_3_mice _Feces_16 hr -0.0 -0.1 -1.7 -0.0 -0.2
phage RB68 -0.3 -0.6 -0.7 -0.1 -0.2
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.1 -0.1 -1.3 -0.2 -0.2
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +0.0 -0.1 -1.4 -0.2 -0.1
control PBS_cage_2_mice _Feces_16 hr -0.1 -0.2 -1.8 +0.2 +0.1
control PBS_cage_2_mouse_2_Cecum_40 hr -0.1 -0.5 -1.2 +0.2 -0.1
phage Phage_N4_cage_3_mice _Feces_22 hr +0.1 -0.1 -1.4 -0.1 -0.2
control PBS_cage_2_mice _Feces_22 hr -0.1 -0.1 -1.6 -0.0 +0.2
phage Ste41 -0.9 -0.1 -0.2 -0.7 +0.2
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.0 +0.2 -1.2 -0.6 +0.2
stress Chlorite 1.25 mM +0.4 +0.1 -1.2 -0.0 -0.4
carbon source carbon source D-Glucose 0.25mM -0.0 +0.1 -1.9 +0.1 +0.6
phage R1_N4_T2_phage8 +0.2 +0.3 -1.2 -0.1 -0.0
stress Ciprofloxacin Hydrochloride 0.0003 mM +0.4 +0.2 +0.8 +0.4 +0.4
phage Papa dilution 10-1 cacl2 maltose +0.2 +0.8 +1.1 +1.0 +0.0
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