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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yhgH and gntY are separated by 58 nucleotides
gntY and gntT are separated by 359 nucleotides
gntT and malQ are separated by 110 nucleotides
malQ and malP are separated by 9 nucleotides
b3413: yhgH - orf, hypothetical protein (VIMSS), at 3,542,904 to 3,543,587
yhgH
b3414: gntY - predicted gluconate transport associated protein (NCBI), at 3,543,646 to 3,544,221
gntY
b3415: gntT - gluconate transporter, high-affinity GNT I system (NCBI), at 3,544,581 to 3,545,897
gntT
b3416: malQ - 4-alpha-glucanotransferase (amylomaltase) (NCBI), at 3,546,008 to 3,548,092
malQ
b3417: malP - maltodextrin phosphorylase (NCBI), at 3,548,102 to 3,550,495
malP
Group
Condition
b3413
b3414
b3415
b3416
b3417
yhgH
gntY
gntT
malQ
malP
carbon source
D-Maltose (C)
+0.0
-0.7
-0.1
-5.3
-1.7
carbon source
D-Maltose (C)
-0.3
-0.5
-0.1
-4.7
-1.8
stress
2,4-Dinitrophenol 2 mM
-0.1
-5.4
+0.0
-0.4
-0.1
carbon source
Glycolic Acid (C)
-0.1
-4.4
+0.1
-0.8
-0.3
carbon source
Glycolic Acid (C)
+0.2
-4.4
+0.1
-0.6
-0.2
carbon source
acetate (C)
-0.2
-4.5
+0.1
-0.3
-0.0
phage
Lambda_ci1857
+0.3
-2.5
-0.2
-1.3
-1.2
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.2
-4.3
-0.1
-0.1
-0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.0
-4.4
-0.0
-0.2
-0.0
carbon source
acetate (C)
+0.1
-4.3
-0.0
-0.4
-0.1
stress
2,4-Dinitrophenol 2 mM
+0.1
-4.1
+0.0
-0.4
-0.2
protonated/deuterated
deuterated glucose in D2O
-0.1
-4.4
+0.0
-0.1
+0.1
carbon source
L-Malic (C)
-0.1
-3.4
+0.1
-0.3
-0.3
protonated/deuterated
deuterated glucose in D2O
-0.1
-3.9
+0.1
-0.1
+0.1
stress
3-methyl-2-butenol 0.625 vol%
+0.3
-3.7
+0.1
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
-0.0
+2.1
-0.2
-1.4
-0.8
stress
Spectinomycin 0.00625 mg/ml
-0.2
+1.9
+0.0
-2.3
+0.7
stress
Spectinomycin 0.0125 mg/ml
-0.3
+2.9
-0.1
-2.5
+1.4
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.3
+3.5
+0.0
+0.5
+0.2
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+0.3
+3.9
-0.1
+0.8
-0.3
plasmid transformation
vcDART vector transformation; agar assay
+0.1
+4.4
-0.0
+0.8
+0.2
plasmid transformation
vcDART vector transformation; agar assay
+0.3
+4.5
-0.0
+0.8
+0.2
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.2
+4.5
-0.2
+1.2
+0.3
plasmid transformation
mariner vector transformation; agar assay
+0.3
+5.4
-0.1
+0.6
+0.2
plasmid transformation
mariner vector transformation; agar assay
+0.3
+5.3
+0.1
+0.6
+0.2
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.3
+4.9
+0.0
+1.1
+0.1
plasmid transformation
mariner vector transformation; agar assay
+0.2
+5.7
-0.0
+0.7
+0.3
stress
Benzalkonium Chloride 0.004 mg/ml
-0.7
+2.9
+0.3
+2.1
+2.2
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+0.1
+6.8
-0.3
+0.1
+0.1
plasmid transformation
vcDART vector transformation; agar assay
+0.2
+5.7
+0.0
+0.8
+0.2
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