Fitness for 5 genes in Escherichia coli BW25113

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	b1963	b4603	b4496	b1967	b1968
		b1963	rseX	yedS	hchA	yedV
control	PBS_cage_1_mice _Feces_16 hr	-0.2	-5.1	-0.5	-0.4	-2.0
phage	Phage_N4_cage_3_mouse_4_Cecum_40 hr	-1.5	-5.5	+0.0	+0.2	-0.6
carbon source	carbon source D-Glucose 0.25mM	-1.4	-4.5	-0.1	-0.6	-0.6
control	PBS_cage_1_mouse_2_Cecum_40 hr	-0.5	-3.2	-0.1	-0.1	-2.1
carbon source	carbon source D-Glucose 0.25mM	-0.8	-4.5	-0.5	-0.2	+0.1
carbon source	carbon source D-Mannose 1mM	-0.2	-4.4	+0.4	-0.1	-1.4
retron_ec_48_control	retron_Ec_48_control	+0.2	-5.1	+0.1	+0.1	-0.7
carbon source	carbon source D-Mannose 0.5mM	-0.4	-4.5	+0.0	-0.0	-0.5
motility	outer cut, LB soft agar motility assay	+0.3	-4.9	-0.1	-0.0	-0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-1.0	-4.2	-0.1	-0.4	+0.7
carbon source	carbon source D-Glucose 5mM	-0.5	-4.2	-0.1	-0.7	+0.4
control	PBS_cage_2_mice _Feces_40 hr	-0.0	-5.3	+0.1	+0.3	-0.1
predation	6 hr rep1_HD100_10fold_dilution_grewON	-0.5	-4.4	+0.2	+0.2	-0.4
protonated/deuterated	deuterated glucose in H2O	-0.5	-3.7	+0.0	-0.0	-0.1
mixed community	Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:10 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan	+0.1	-4.4	+0.3	+0.1	-0.4
control	PBS_cage_1_mice _Feces_22 hr	-0.1	-3.1	-0.3	-0.4	-0.3
control	PBS_cage_2_mouse_1_Cecum_40 hr	+0.0	-5.2	+0.2	+0.2	+0.7
stress	Cisplatin 0.1 mg/ml	-0.2	-3.7	+0.1	+0.0	-0.2
phage	R1_N4_T2_phage8	+0.2	-3.8	-0.1	+0.1	-0.2
attachment_assay_attached_sample	Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB	+0.7	-3.9	-0.1	+0.2	-0.7
control	PBS_cage_2_mice _Feces_22 hr	+0.2	-3.9	-0.0	+0.4	+0.1
phage	T7_phage 0.0015625 MOI TC2	-1.4	-2.6	-0.0	+0.5	+0.7
drt_type_3	DRT_type_3	+0.5	-3.0	+0.2	+0.3	-0.4
phage	N4_phage 0.009375 MOI TC1	+0.4	-3.0	+0.1	-0.2	+0.6
phage	N4_phage 0.0009375 MOI TC2	+0.6	-3.0	-0.1	-0.3	+1.0
phage	T7_phage 0.00015625 MOI TC4	+1.5	-2.7	+0.0	-0.3	+0.5
phage	N4_phage 0.00009375 MOI TC4	-0.9	-1.4	-0.2	+0.2	+1.5
phage	N4_phage 0.009375 MOI TC2	-0.4	-2.1	+0.0	+0.2	+1.9
stress	LB Anaerobic with Nitrofurantoin 0.00003125 mM	-2.1	+1.8	+0.1	-0.1	+0.2
stress	Trimethoprim 0.005 mM	-0.3	+1.7	-0.2	+0.4	+1.9