Fitness for 5 genes in Escherichia coli BW25113

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500 ntotsA and otsB overlap by 26 nucleotidesotsB and araH are separated by 166 nucleotidesaraH and araG are separated by 14 nucleotidesaraG and araF are separated by 69 nucleotides b1896: otsA - trehalose-6-phosphate synthase (NCBI), at 1,978,212 to 1,979,636 otsA b1897: otsB - trehalose-6-phosphate phosphatase, biosynthetic (NCBI), at 1,979,611 to 1,980,411 otsB b4460: araH - fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,980,578 to 1,981,564 araH b1900: araG - fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 1,981,579 to 1,983,093 araG b1901: araF - L-arabinose transporter subunit (NCBI), at 1,983,163 to 1,984,152 araF
Group Condition b1896 b1897 b4460 b1900 b1901
otsA otsB araH araG araF
carbon source carbon source D-Mannose 5mM +0.4 -0.3 -8.2 +0.1 +0.6
carbon source acetate (C) -1.4 -2.0 -0.5 -0.5 -0.0
stress octanol 0.08 vol% -0.1 -0.4 -1.5 +0.5 -1.1
carbon source acetate (C) -1.1 -1.7 -0.0 -0.2 +0.4
carbon source carbon source D-Glucose 0.25mM +0.0 +0.0 -1.7 +0.5 -1.4
carbon source carbon source D-Glucose 5mM +0.4 -0.7 -0.9 -1.1 +0.1
motility inner cut, LB soft agar motility assay +0.6 +1.6 -1.1 +0.2 -0.2
motility outer cut, LB soft agar motility assay +0.7 +1.6 -0.0 -0.8 -0.2
nitrogen source Putrescine (N) +1.5 -1.1 +0.2 +0.2 +0.5
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.1 -0.1 +0.6 +1.5 +1.4
phage Phage_N4_cage_3_mice _Feces_22 hr +0.2 -0.2 +0.9 +1.1 +1.3
phage Phage_N4_cage_4_mice _Feces_22 hr +0.2 +0.0 +1.1 +1.0 +1.3
motility outer cut, LB soft agar motility assay +1.1 +2.5 +0.7 -0.7 +0.1
control PBS_cage_2_mice _Feces_22 hr +0.1 -0.1 +1.1 +1.2 +1.5
phage Phage_N4_cage_3_mice _Feces_40 hr +0.1 -0.1 +1.2 +1.4 +1.6
control PBS_cage_1_mice _Feces_22 hr +0.0 +0.4 +1.5 +1.1 +1.3
control PBS_cage_2_mice _Feces_40 hr -0.1 -0.0 +1.5 +1.9 +2.1
control PBS_cage_2_mouse_3_Cecum_40 hr -0.2 +0.2 +1.4 +2.0 +2.0
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr +0.3 +0.1 +1.9 +1.5 +1.7
control PBS_cage_2_mouse_2_Cecum_40 hr -0.0 +0.6 +1.0 +1.8 +2.1
phage Phage_N4_cage_4_mice _Feces_40 hr +0.1 -0.0 +1.9 +1.8 +2.1
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +0.0 +0.0 +1.7 +1.9 +2.2
control PBS_cage_2_mouse_1_Cecum_40 hr -0.1 +0.2 +1.3 +2.2 +2.5
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.0 +0.2 +2.1 +1.8 +2.0
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -0.1 +0.7 +2.4 +2.3 +1.1
control PBS_cage_1_mice _Feces_40 hr -0.1 +0.1 +2.5 +2.0 +2.1
control PBS_cage_1_mouse_2_Cecum_40 hr -0.0 -0.1 +3.1 +1.7 +2.2
control PBS_cage_1_mouse_1_Cecum_40 hr -0.0 +0.4 +2.1 +2.3 +3.0
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +0.1 +0.0 +2.7 +2.4 +2.5
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr -0.1 +0.0 +2.8 +3.1 +2.8
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