Fitness for 5 genes in Escherichia coli BW25113

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500 ntrttR and tpr overlap by 150 nucleotidestpr and tyrV are separated by 67 nucleotidestyrV and tyrT are separated by 209 nucleotidestyrT and purU are separated by 159 nucleotides b4425: rttR - regulatory sRNA (NCBI), at 1,286,289 to 1,286,459 rttR b1229: tpr - predicted protamine-like protein (RefSeq), at 1,286,310 to 1,286,399 tpr b1230: tyrV - tRNA-Tyr (NCBI), at 1,286,467 to 1,286,551 tyrV b1231: tyrT - tRNA-Tyr (NCBI), at 1,286,761 to 1,286,845 tyrT b1232: purU - formyltetrahydrofolate deformylase (NCBI), at 1,287,005 to 1,287,847 purU
Group Condition b4425 b1229 b1230 b1231 b1232
rttR tpr tyrV tyrT purU
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. N.D. N.D. -2.8 -5.2
carbon source carbon source D-Glucose 1mM N.D. N.D. N.D. -2.8 -5.2
carbon source Ying_sugar7 rep C; time point 3 N.D. N.D. N.D. +0.4 -8.3
carbon source Ying_Nucleobase14 rep A; time point 3 N.D. N.D. N.D. -0.9 -6.6
carbon source Ying_sugar7 rep B; time point 3 N.D. N.D. N.D. -1.1 -5.8
carbon source Ying_Nucleobase14 rep C; time point 3 N.D. N.D. N.D. -1.2 -5.7
carbon source carbon source D-Glucose 0.25mM N.D. N.D. N.D. -5.1 -1.4
carbon source Ying_sugar7 rep A; time point 3 N.D. N.D. N.D. -0.4 -6.2
carbon source Ying_Nucleobase14 rep B; time point 3 N.D. N.D. N.D. +0.3 -6.6
carbon source Ying_OrganicAcid7 rep B; time point 3 N.D. N.D. N.D. -0.8 -5.3
carbon source carbon source D-Glucose 0.25mM N.D. N.D. N.D. +0.1 -6.2
msc 22hr_MSC_rep1_highinoculum N.D. N.D. N.D. -5.5 -0.3
carbon source Ying_Others16 rep B; time point 1 N.D. N.D. N.D. -5.2 -0.3
carbon source Ying_OrganicAcid7 rep A; time point 3 N.D. N.D. N.D. -0.0 -5.3
sir2-hera SIR2-HerA N.D. N.D. N.D. -5.4 -0.0
carbon source carbon source D-Glucose 1mM N.D. N.D. N.D. -1.4 -4.0
carbon source carbon source D-Glucose 5mM N.D. N.D. N.D. -3.0 -2.2
carbon source Ying_sugar7 rep B; time point 2 N.D. N.D. N.D. -0.7 -4.5
carbon source carbon source D-Mannose 0.5mM N.D. N.D. N.D. -2.0 -3.2
carbon source Ying_sugar7 rep C; time point 2 N.D. N.D. N.D. -0.6 -4.4
carbon source Ying_OrganicAcid7 rep C; time point 3 N.D. N.D. N.D. -0.7 -4.0
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) N.D. N.D. N.D. -1.0 -3.7
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. N.D. N.D. -0.1 -4.5
carbon source carbon source D-Glucose 0.5mM N.D. N.D. N.D. -1.1 -3.3
carbon source Ying_sugar7 rep A; time point 2 N.D. N.D. N.D. -0.4 -4.0
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. N.D. N.D. -0.5 -3.8
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) N.D. N.D. N.D. -0.9 -3.3
carbon source carbon source D-Mannose 0.5mM N.D. N.D. N.D. -0.6 -3.6
carbon source Ying_OrganicAcid7 rep A; time point 2 N.D. N.D. N.D. -0.8 -3.4
carbon source carbon source D-Glucose 20mM N.D. N.D. N.D. +0.5 -3.4
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