Fitness for 5 genes in Escherichia coli BW25113

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500 ntyjjX and ytjC are separated by 51 nucleotidesytjC and rob overlap by 4 nucleotidesrob and creA are separated by 210 nucleotidescreA and creB are separated by 12 nucleotides b4394: yjjX - orf, hypothetical protein (VIMSS), at 4,631,256 to 4,631,768 yjjX b4395: ytjC - phosphoglycerate mutase (NCBI), at 4,631,820 to 4,632,467 ytjC b4396: rob - DNA-binding transcriptional activator (NCBI), at 4,632,464 to 4,633,333 rob b4397: creA - hypothetical protein (NCBI), at 4,633,544 to 4,634,017 creA b4398: creB - DNA-binding response regulator in two-component regulatory system with CreC (NCBI), at 4,634,030 to 4,634,719 creB
Group Condition b4394 b4395 b4396 b4397 b4398
yjjX ytjC rob creA creB
stress octanol 0.08 vol% +0.1 +0.5 -5.1 +0.6 -0.1
phage Ste41 -2.3 -0.2 -0.8 +0.0 -0.4
carbon source Uridine 0.4095 mM (C) -0.4 -1.7 -1.0 +0.3 +0.0
carbon source Ying_Nucleobase14 rep A; time point 3 +0.4 -1.6 -1.0 -0.2 -0.2
carbon source Ying_Nucleobase14 rep C; time point 3 +0.2 -1.5 -0.9 -0.1 -0.2
carbon source Ying_Nucleobase14 rep B; time point 3 +0.6 -1.9 -0.8 -0.2 -0.1
carbon source carbon source D-Glucose 0.25mM -1.1 -1.1 -0.2 +0.2 -0.1
stress Benzalkonium Chloride 0.004 mg/ml -0.4 +0.2 -2.9 +0.6 +0.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.6 +0.5 -0.1 -0.4 -0.6
carbon source a-Ketoglutaric (C) +0.2 -2.4 -0.7 +1.0 -0.3
carbon source L-Malic (C) -0.3 -1.9 -0.7 +1.0 -0.2
stress toluene 2.5 vol% -1.9 -0.3 +0.6 -0.7 +0.2
carbon source acetate (C) +0.2 -0.7 -1.9 +1.0 -0.4
carbon source Acetate (C) -0.1 -0.9 -1.8 +1.2 -0.2
carbon source succinate (C) -0.7 -0.5 -1.0 +0.9 -0.3
stress LB Aerobic with Irgasan 0.0000003125 mM -0.7 -0.3 -1.2 +0.6 +0.2
carbon source acetate (C) +0.2 -0.9 -1.8 +1.2 -0.3
phage Δdbn_10 -0.5 -0.6 -0.5 +0.7 -0.6
carbon source L-Malic (C) +0.3 -1.3 -0.9 +0.6 +0.0
carbon source a-Ketoglutaric (C) +0.1 -1.9 -0.6 +1.2 -0.1
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.2 +0.2 -1.9 +0.6 -0.2
predation 6 hr rep1_HD100_10fold_dilution_grewON -2.5 +0.4 +0.1 +1.0 -0.1
carbon source Acetate (C) +0.4 -0.7 -1.7 +1.2 -0.1
stress 3-methyl-1-butanol 1.25 vol% -0.7 +0.4 +1.4 -0.8 -0.2
stress Cephalothin 0.01 mg/ml -0.0 -0.4 +1.7 -0.6 -0.1
phage T7_phage 0.00015625 MOI TC4 -1.1 +0.6 +1.5 +0.1 +0.8
stress 3-methyl-1-butanol 0.625 vol% -0.0 +0.2 +2.1 -0.5 +0.4
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.8 -0.0 +1.3 +0.8 +0.1
stress Carbenicillin 0.008 mg/ml +0.4 +0.2 +2.4 +0.2 +0.1
stress Butanol 1.25 vol% +0.1 +0.1 +4.5 -0.1 +0.0
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