Fitness for 5 genes in Escherichia coli BW25113

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500 ntserB and radA are separated by 48 nucleotidesradA and nadR are separated by 20 nucleotidesnadR and yjjK are separated by 307 nucleotidesyjjK and slt are separated by 210 nucleotides b4388: serB - 3-phosphoserine phosphatase (NCBI), at 4,622,918 to 4,623,886 serB b4389: radA - predicted repair protein (NCBI), at 4,623,935 to 4,625,317 radA b4390: nadR - probable nadAB transcriptional regulator (VIMSS), at 4,625,338 to 4,626,570 nadR b4391: yjjK - fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 4,626,878 to 4,628,545 yjjK b4392: slt - soluble lytic murein transglycosylase (VIMSS), at 4,628,756 to 4,630,693 slt
Group Condition b4388 b4389 b4390 b4391 b4392
serB radA nadR yjjK slt
carbon source Ying_OrganicAcid7 rep A; time point 2 -8.6 +0.2 -0.2 +0.6 -0.0
carbon source Ying_sugar7 rep C; time point 2 -8.4 +0.0 -0.1 +0.6 -0.1
carbon source Ying_sugar7 rep B; time point 3 -8.4 -0.1 -0.1 +0.7 -0.0
carbon source Ying_sugar7 rep C; time point 3 -8.2 -0.1 -0.1 +0.6 -0.1
carbon source Ying_OrganicAcid7 rep B; time point 3 -8.5 -0.0 -0.1 +0.8 -0.0
carbon source Ying_sugar7 rep A; time point 3 -8.3 -0.1 -0.1 +0.7 +0.1
carbon source Ying_sugar7 rep A; time point 2 -8.0 -0.2 -0.1 +0.5 +0.0
carbon source carbon source D-Mannose 20mM -7.8 -0.1 +0.1 +0.1 -0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 -8.3 +0.1 -0.2 +0.8 -0.0
carbon source carbon source D-Mannose 0.5mM -7.2 -0.3 -0.1 +0.3 -0.1
carbon source Ying_sugar7 rep B; time point 2 -8.2 +0.1 -0.0 +0.6 +0.0
carbon source carbon source D-Mannose 1mM -7.5 -0.1 -0.1 +0.6 -0.2
carbon source Ying_Nucleobase14 rep A; time point 2 -8.6 -0.2 +0.6 +1.0 -0.0
carbon source carbon source D-Mannose 5mM -6.8 -0.5 +0.2 +0.3 -0.3
carbon source carbon source D-Glucose 0.25mM -7.2 -0.0 +0.3 +0.4 -0.5
carbon source carbon source D-Glucose 1mM -7.6 -0.0 +0.2 +0.2 +0.2
carbon source carbon source D-Mannose 1mM -7.3 -0.1 +0.3 +0.3 -0.2
nutrient M9 Glucose 0.2%, Thauer's vit mix without biotin with Avidin -6.6 -0.1 -0.7 +0.4 +0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 -7.4 +0.0 -0.2 +0.8 -0.0
carbon source Glucose (C) -7.5 -0.1 +0.3 +0.7 -0.1
carbon source Ying_Nucleobase14 rep C; time point 2 -7.9 -0.1 +0.5 +1.0 -0.1
carbon source Ying_Nucleobase14 rep A; time point 3 -8.3 -0.0 +0.7 +1.4 -0.1
nitrogen source Putrescine (N) -4.9 +0.1 -2.3 +1.2 +0.0
carbon source Ying_Nucleobase14 rep C; time point 3 -7.9 +0.0 +0.6 +1.4 -0.2
carbon source Ying_Nucleobase14 rep B; time point 3 -8.1 +0.0 +0.7 +1.5 -0.1
carbon source Ying_Nucleobase14 rep B; time point 2 -6.9 -0.1 +0.6 +1.1 -0.0
carbon source Glycolic Acid (C) -4.7 -0.1 -1.7 +1.1 +0.1
nitrogen source Putrescine (N) -3.9 +0.1 -2.6 +1.3 -0.1
carbon source D-Glucosamine Hydrochloride (C) -5.6 -0.2 +0.8 +1.0 -0.3
carbon source L-Malic (C) -5.3 -0.5 +1.1 +0.6 -0.2
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