Fitness for 5 genes in Escherichia coli BW25113

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500 ntdeoD and yjjJ are separated by 166 nucleotidesyjjJ and lplA are separated by 0 nucleotideslplA and ytjB are separated by 27 nucleotidesytjB and serB are separated by 105 nucleotides b4384: deoD - purine nucleoside phosphorylase (NCBI), at 4,618,906 to 4,619,625 deoD b4385: yjjJ - predicted DNA-binding transcriptional regulator (NCBI), at 4,619,792 to 4,621,123 yjjJ b4386: lplA - lipoate-protein ligase A (NCBI), at 4,621,124 to 4,622,140 lplA b4387: ytjB - hypothetical protein (NCBI), at 4,622,168 to 4,622,812 ytjB b4388: serB - 3-phosphoserine phosphatase (NCBI), at 4,622,918 to 4,623,886 serB
Group Condition b4384 b4385 b4386 b4387 b4388
deoD yjjJ lplA ytjB serB
carbon source Ying_Nucleobase14 rep A; time point 3 -1.7 -0.1 +0.0 +0.1 -8.3
carbon source Ying_Nucleobase14 rep A; time point 2 -1.5 +0.1 -0.0 +0.0 -8.6
carbon source Ying_Nucleobase14 rep B; time point 3 -1.6 -0.0 +0.0 +0.1 -8.1
carbon source Ying_Nucleobase14 rep C; time point 3 -1.5 -0.1 -0.2 +0.0 -7.9
carbon source Ying_Nucleobase14 rep C; time point 2 -1.4 +0.1 -0.1 -0.0 -7.9
carbon source carbon source D-Mannose 0.5mM -1.0 +0.2 +0.2 -0.8 -7.2
carbon source Ying_Nucleobase14 rep B; time point 2 -1.6 +0.1 -0.1 -0.1 -6.9
carbon source Ying_OrganicAcid7 rep A; time point 2 +0.2 -0.1 -0.2 +0.2 -8.6
carbon source Ying_sugar7 rep B; time point 3 +0.1 +0.1 -0.2 -0.1 -8.4
carbon source Ying_sugar7 rep C; time point 3 +0.2 +0.1 -0.3 -0.2 -8.2
carbon source Ying_sugar7 rep A; time point 3 +0.1 +0.1 -0.1 +0.1 -8.3
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.2 +0.1 -0.1 +0.2 -8.5
carbon source Ying_sugar7 rep C; time point 2 +0.2 +0.1 +0.1 +0.0 -8.4
carbon source carbon source D-Mannose 20mM +0.0 +0.2 -0.4 +0.0 -7.8
carbon source Ying_sugar7 rep A; time point 2 +0.1 +0.1 -0.2 -0.1 -8.0
carbon source Ying_sugar7 rep B; time point 2 +0.2 +0.2 +0.0 -0.2 -8.2
carbon source Glucose (C) -0.1 +0.0 -0.0 -0.2 -7.5
carbon source carbon source D-Mannose 5mM +0.3 -0.8 -0.0 -0.4 -6.8
carbon source carbon source D-Glucose 5mM +0.0 -0.1 -0.0 -0.8 -6.9
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.2 +0.1 -0.0 +0.2 -8.3
carbon source carbon source D-Mannose 1mM +0.3 -0.2 -0.2 +0.0 -7.3
carbon source carbon source D-Mannose 1mM +0.1 +0.3 +0.2 -0.5 -7.5
carbon source carbon source D-Glucose 0.25mM -0.5 +0.3 -0.1 +0.2 -7.2
no stress control M9 no stress control; Dimethyl Sulfoxide 1 vol% 48 hr +0.1 -0.1 -0.1 -0.1 -7.0
carbon source carbon source D-Glucose 20mM +0.1 +0.4 +0.0 -0.9 -6.7
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.1 +0.1 +0.0 +0.2 -7.4
carbon source carbon source D-Glucose 1mM +0.2 +0.1 +0.0 +0.3 -7.6
carbon source carbon source D-Glucose 1mM -0.1 -0.2 -0.2 +0.3 -6.6
carbon source Ying_all64 rep B; time point 3 -0.1 +0.1 +0.1 +0.1 -6.9
stress LB Aerobic with Irgasan 0.0000003125 mM +0.0 -0.4 -3.8 +2.1 +1.6
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