Fitness for 5 genes in Escherichia coli BW25113

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500 ntdeoA and deoB are separated by 51 nucleotidesdeoB and deoD are separated by 56 nucleotidesdeoD and yjjJ are separated by 166 nucleotidesyjjJ and lplA are separated by 0 nucleotides b4382: deoA - thymidine phosphorylase (NCBI), at 4,616,252 to 4,617,574 deoA b4383: deoB - phosphopentomutase (NCBI), at 4,617,626 to 4,618,849 deoB b4384: deoD - purine nucleoside phosphorylase (NCBI), at 4,618,906 to 4,619,625 deoD b4385: yjjJ - predicted DNA-binding transcriptional regulator (NCBI), at 4,619,792 to 4,621,123 yjjJ b4386: lplA - lipoate-protein ligase A (NCBI), at 4,621,124 to 4,622,140 lplA
Group Condition b4382 b4383 b4384 b4385 b4386
deoA deoB deoD yjjJ lplA
carbon source Ying_Nucleobase14 rep A; time point 3 +0.5 -8.4 -1.7 -0.1 +0.0
carbon source Ying_Nucleobase14 rep C; time point 3 +0.5 -8.2 -1.5 -0.1 -0.2
carbon source Ying_Nucleobase14 rep C; time point 2 +0.4 -8.4 -1.4 +0.1 -0.1
carbon source Ying_Nucleobase14 rep B; time point 2 +0.5 -8.2 -1.6 +0.1 -0.1
carbon source Ying_Nucleobase14 rep B; time point 3 +0.9 -8.2 -1.6 -0.0 +0.0
carbon source Ying_Nucleobase14 rep A; time point 2 +0.4 -7.6 -1.5 +0.1 -0.0
carbon source Adenosine 0.3742 mM (C) +0.5 -3.7 -3.6 +0.2 -0.1
carbon source Ying_Nucleobase14 rep C; time point 1 +0.1 -4.7 -0.8 +0.0 -0.2
carbon source Ying_Nucleobase14 rep B; time point 1 +0.2 -5.0 -0.7 +0.1 -0.1
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.1 -3.5 -1.7 -0.2 -0.0
stress LB Aerobic with Irgasan 0.0000003125 mM -0.0 -1.0 +0.0 -0.4 -3.8
carbon source Adenosine 0.3742 mM (C) +0.4 -2.6 -2.8 +0.1 -0.2
carbon source Adenosine 0.3742 mM (C) +0.5 -2.6 -2.9 -0.0 -0.0
stress Benzalkonium Chloride 0.004 mg/ml -0.2 -3.0 -1.6 +0.4 -0.3
carbon source Ying_Nucleobase14 rep A; time point 1 +0.3 -3.9 -0.9 +0.0 +0.0
carbon source Guanosine 0.35306 mM (C) +0.8 -2.6 -2.5 -0.1 +0.1
carbon source Guanosine 0.35306 mM (C) +0.8 -3.0 -2.3 +0.1 +0.1
carbon source Inosine 0.3728 mM (C) +1.4 -2.7 -3.1 -0.1 +0.3
stress 2,4-Dinitrophenol 2 mM -0.1 -2.4 -1.4 -0.1 +0.1
stress 2,4-Dinitrophenol 2 mM +0.0 -2.6 -1.4 +0.1 +0.2
carbon source Uridine 0.4095 mM (C) +0.1 -3.5 +0.1 -0.1 -0.1
carbon source Cytidine 0.41115 mM (C) -0.3 -3.1 +0.1 -0.2 -0.1
carbon source Cytidine 0.41115 mM (C) -0.3 -3.2 +0.1 -0.0 -0.0
carbon source Inosine 0.3728 mM (C) +1.6 -2.5 -2.3 +0.1 -0.2
carbon source Cytidine 0.41115 mM (C) -0.4 -2.9 -0.1 +0.1 -0.0
carbon source Inosine 0.3728 mM (C) +1.5 -2.3 -2.4 -0.0 +0.0
carbon source Guanosine 0.35306 mM (C) +1.2 -2.3 -1.9 -0.1 -0.1
stress LB Anaerobic with Spectinomycin 0.0000625 mM +0.4 -1.7 -1.3 +0.1 +0.1
stress LB Anaerobic with Spectinomycin 0.0000625 mM +0.4 -1.4 -1.7 +0.2 +0.2
stress Spectinomycin 0.0125 mg/ml +0.4 -1.6 -1.2 +0.1 +0.0
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