Fitness for 5 genes in Escherichia coli BW25113

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500 ntyjjI and deoC are separated by 257 nucleotidesdeoC and deoA are separated by 126 nucleotidesdeoA and deoB are separated by 51 nucleotidesdeoB and deoD are separated by 56 nucleotides b4380: yjjI - hypothetical protein (NCBI), at 4,613,538 to 4,615,088 yjjI b4381: deoC - deoxyribose-phosphate aldolase (NCBI), at 4,615,346 to 4,616,125 deoC b4382: deoA - thymidine phosphorylase (NCBI), at 4,616,252 to 4,617,574 deoA b4383: deoB - phosphopentomutase (NCBI), at 4,617,626 to 4,618,849 deoB b4384: deoD - purine nucleoside phosphorylase (NCBI), at 4,618,906 to 4,619,625 deoD
Group Condition b4380 b4381 b4382 b4383 b4384
yjjI deoC deoA deoB deoD
carbon source Ying_Nucleobase14 rep C; time point 2 +1.0 +1.2 +0.4 -8.4 -1.4
carbon source Ying_Nucleobase14 rep B; time point 2 +1.0 +1.2 +0.5 -8.2 -1.6
carbon source Ying_Nucleobase14 rep A; time point 3 +1.1 +1.9 +0.5 -8.4 -1.7
carbon source Ying_Nucleobase14 rep A; time point 2 +1.0 +1.4 +0.4 -7.6 -1.5
carbon source Ying_Nucleobase14 rep C; time point 3 +1.2 +1.8 +0.5 -8.2 -1.5
carbon source Ying_Nucleobase14 rep B; time point 3 +1.3 +1.6 +0.9 -8.2 -1.6
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.1 -0.6 +0.1 -3.5 -1.7
stress 2,4-Dinitrophenol 2 mM +0.1 -1.3 +0.0 -2.6 -1.4
carbon source Adenosine 0.3742 mM (C) +0.8 +0.9 +0.5 -3.7 -3.6
stress 2,4-Dinitrophenol 2 mM -0.0 -1.1 -0.1 -2.4 -1.4
stress Benzalkonium Chloride 0.004 mg/ml +0.5 -0.6 -0.2 -3.0 -1.6
carbon source Ying_Nucleobase14 rep B; time point 1 +0.6 +0.3 +0.2 -5.0 -0.7
stress Spectinomycin 0.0125 mg/ml +0.8 -2.9 +0.4 -1.6 -1.2
carbon source Ying_Nucleobase14 rep C; time point 1 +0.6 +0.7 +0.1 -4.7 -0.8
carbon source Cytidine 0.41115 mM (C) +0.1 -0.6 -0.4 -2.9 -0.1
stress Spectinomycin 0.00625 mg/ml +0.5 -2.6 +0.4 -1.1 -0.9
carbon source Cytidine 0.41115 mM (C) +0.1 -0.3 -0.3 -3.2 +0.1
carbon source Ying_Nucleobase14 rep A; time point 1 +0.6 +0.7 +0.3 -3.9 -0.9
carbon source Adenosine 0.3742 mM (C) +0.8 +1.1 +0.4 -2.6 -2.8
carbon source Adenosine 0.3742 mM (C) +0.9 +1.0 +0.5 -2.6 -2.9
stress LB Anaerobic with Spectinomycin 0.0000625 mM +0.4 -0.4 +0.4 -1.4 -1.7
carbon source Uridine 0.4095 mM (C) +0.5 +0.6 +0.1 -3.5 +0.1
carbon source Inosine 0.3728 mM (C) +1.4 +1.0 +1.4 -2.7 -3.1
carbon source Guanosine 0.35306 mM (C) +0.8 +2.3 +0.8 -3.0 -2.3
carbon source Uridine 0.4095 mM (C) +0.6 +0.6 +0.1 -2.7 +0.0
carbon source Guanosine 0.35306 mM (C) +0.8 +2.3 +0.8 -2.6 -2.5
carbon source Inosine 0.3728 mM (C) +1.5 +0.9 +1.6 -2.5 -2.3
carbon source Inosine 0.3728 mM (C) +1.4 +1.1 +1.5 -2.3 -2.4
carbon source Guanosine 0.35306 mM (C) +1.0 +3.3 +1.2 -2.3 -1.9
stress 2-Furfuraldehyde 0.25 vol% -0.4 +1.1 +0.5 +1.1 +0.8
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