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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yjiK and yjiL are separated by 318 nucleotides
yjiL and yjiM are separated by 9 nucleotides
yjiM and yjiN are separated by 115 nucleotides
yjiN and yjiO are separated by 40 nucleotides
b4333: yjiK - conserved protein (RefSeq), at 4,560,766 to 4,561,626
yjiK
b4334: yjiL - putative enzyme (VIMSS), at 4,561,945 to 4,562,712
yjiL
b4335: yjiM - orf, hypothetical protein (VIMSS), at 4,562,722 to 4,563,873
yjiM
b4336: yjiN - conserved inner membrane protein (NCBI), at 4,563,989 to 4,565,269
yjiN
b4337: yjiO - multidrug efflux system protein (NCBI), at 4,565,310 to 4,566,542
yjiO
Group
Condition
b4333
b4334
b4335
b4336
b4337
yjiK
yjiL
yjiM
yjiN
yjiO
phage
Δdbn_10
+0.1
+0.6
-0.4
-1.2
-0.6
carbon source
carbon source D-Glucose 0.25mM
-0.6
-0.0
-0.2
+0.6
-1.2
carbon source
Ying_Others16 rep A; time point 2
-0.0
-0.7
-0.5
+0.3
-0.4
stress
LB Anaerobic with Furaltadone 0.000015625 mM
+0.0
-0.0
+0.2
+0.3
-1.6
phage
RB68
+0.1
+0.5
-0.3
-0.7
-0.7
stress
undecene 5 vol%
-0.2
-0.4
+0.0
+0.1
-0.8
phage
T7_phage 0.0015625 MOI TC2
-0.1
-0.8
+0.0
+0.3
-0.5
stress
Chlorite 1.25 mM
+0.2
-0.3
-0.3
+0.2
-0.9
motility
outer cut, LB soft agar motility assay
-0.7
-0.4
+0.1
-0.6
+0.5
msc
3hr_MSC_rep2_lowinoculum
-0.3
-0.5
-0.1
-0.3
+0.3
stress
octanol 0.08 vol%
+0.1
-0.3
+0.2
-0.5
-0.4
carbon source
Ying_Others16 rep A; time point 1
-0.3
-0.4
+0.2
+0.2
-0.4
stress
LB Anaerobic with Furaltadone 0.000015625 mM
+0.0
+0.6
+0.0
+0.4
-1.5
stress
limonene 1.25 vol%
+0.0
-0.2
+0.2
+0.3
-0.8
phage
T7_phage 0.00015625 MOI TC3
+0.0
-0.9
-0.0
+0.4
+0.2
stress
Ciprofloxacin Hydrochloride 0.0003 mM
-0.0
-0.0
-0.6
+0.7
-0.2
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
+0.2
-0.3
+0.1
-0.4
+0.4
phage
R2_N4_T2_phage10
+0.3
+0.3
-0.3
+0.1
-0.4
stress
limonene 2.5 vol%
+0.2
-0.1
+0.0
+0.7
-0.7
stress
limonene 2.5 vol%
+0.2
-0.1
+0.2
+0.7
-0.6
phage
Ste41
+0.1
+0.8
+0.3
-0.3
-0.4
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-0.3
+0.8
-0.6
+0.9
-0.1
nophagecontrol
R1_N4_T1_phage0
+0.3
-0.4
-0.2
+0.4
+0.5
attachment_assay_attached_sample
Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
+0.1
-0.2
+0.6
-0.1
+0.3
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
+0.0
+0.5
+0.6
-0.3
-0.0
stress
limonene 5 vol%
+0.0
+0.2
+0.2
+0.8
-0.3
stress
LB Anaerobic with Spectinomycin 0.0000625 mM
-0.2
+0.1
+0.2
+0.6
+0.3
stress
LB Anaerobic with Ticarcillin 0.00003125 mM
-0.2
+0.1
+0.2
+0.6
+0.4
stress
Aluminum chloride 5 mM
+0.1
+0.4
+0.2
+0.3
+0.7
phage
Papa dilution 10-1 cacl2 maltose
+0.2
+0.7
+0.7
+0.7
+0.6
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