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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
fimH and gntP are separated by 242 nucleotides
gntP and uxuA are separated by 339 nucleotides
uxuA and uxuB are separated by 80 nucleotides
uxuB and uxuR are separated by 214 nucleotides
b4320: fimH - minor component of type 1 fimbriae (NCBI), at 4,546,831 to 4,547,733
fimH
b4321: gntP - fructuronate transporter (NCBI), at 4,547,976 to 4,549,319
gntP
b4322: uxuA - mannonate dehydratase (NCBI), at 4,549,659 to 4,550,843
uxuA
b4323: uxuB - D-mannonate oxidoreductase, NAD-binding (NCBI), at 4,550,924 to 4,552,384
uxuB
b4324: uxuR - DNA-binding transcriptional repressor (NCBI), at 4,552,599 to 4,553,372
uxuR
Group
Condition
b4320
b4321
b4322
b4323
b4324
fimH
gntP
uxuA
uxuB
uxuR
carbon source
D-Glucuronic Acid (C)
+0.0
+0.3
-4.3
-0.9
-0.8
carbon source
D-Glucuronic Acid (C)
-0.1
+0.3
-4.2
-0.9
-0.6
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-1.2
+0.1
-0.2
-0.1
-1.9
stress
2,4-Dinitrophenol 2 mM
-0.1
-0.2
-0.1
-0.1
-2.8
phage
Ste41
-2.2
+0.1
-0.2
-0.0
-0.5
stress
2,4-Dinitrophenol 2 mM
-0.0
-0.1
+0.0
-0.2
-2.6
control
PBS_cage_2_mouse_3_Cecum_40 hr
-0.2
+0.0
-1.4
-0.1
-1.0
phage
Phage_N4_cage_3_mouse_2_Cecum_40 hr
-0.1
-0.2
-1.2
-0.1
-0.7
phage
Phage_N4_cage_3_mouse_1_Cecum_40 hr
-0.2
+0.1
-1.1
-0.0
-1.1
control
PBS_cage_1_mouse_1_Cecum_40 hr
-0.2
-0.5
-0.7
-0.1
-0.7
phage
Phage_N4_cage_4_mice _Feces_40 hr
-0.1
-0.0
-1.2
-0.1
-0.8
lb
LB
-0.9
-0.1
-0.2
+0.1
-1.0
lb
LB
-1.2
+0.0
+0.1
-0.0
-0.9
control
PBS_cage_1_mice _Feces_40 hr
+0.0
-0.1
-0.7
-0.2
-1.1
phage
Phage_N4_cage_4_mouse_2_Cecum_40 hr
-0.0
+0.2
-1.0
-0.2
-0.7
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.2
-0.1
-0.0
-0.4
-1.5
control
PBS_cage_2_mouse_1_Cecum_40 hr
-0.0
-0.2
-1.2
+0.2
-0.6
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
-0.1
+0.0
-1.3
+0.3
-0.6
control
PBS_cage_2_mice _Feces_40 hr
+0.2
+0.1
-1.3
+0.1
-0.8
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.3
+0.4
+0.2
-0.2
-1.2
control
PBS_cage_2_mouse_2_Cecum_40 hr
+0.2
+0.1
-1.3
+0.6
-0.6
phage
Ste41
-1.6
-0.3
+0.5
+0.3
+0.2
msc
22hr_MSC_rep1_highinoculum
+2.0
-0.0
+0.0
+0.2
-0.1
msc
22hr_MSC_rep2_lowinoculum
+1.9
+0.1
+0.0
-0.0
+0.2
msc
22hr_MSC_rep1_lowinoculum
+2.2
+0.0
-0.1
-0.1
+0.1
msc
22hr_mediaonly_rep1_lowinoculum
+2.3
-0.1
+0.1
-0.1
+0.2
msc
22hr_MSC_rep2_highinoculum
+2.4
+0.0
+0.1
+0.0
+0.1
msc
22hr_mediaonly_rep1_highinoculum
+2.3
+0.1
+0.1
+0.0
+0.3
msc
22hr_mediaonly_rep2_highinoculum
+2.7
+0.0
+0.2
-0.0
+0.2
msc
22hr_mediaonly_rep2_lowinoculum
+2.9
-0.1
+0.2
+0.2
+0.2
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