Fitness for 5 genes in Escherichia coli BW25113

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500 ntfimH and gntP are separated by 242 nucleotidesgntP and uxuA are separated by 339 nucleotidesuxuA and uxuB are separated by 80 nucleotidesuxuB and uxuR are separated by 214 nucleotides b4320: fimH - minor component of type 1 fimbriae (NCBI), at 4,546,831 to 4,547,733 fimH b4321: gntP - fructuronate transporter (NCBI), at 4,547,976 to 4,549,319 gntP b4322: uxuA - mannonate dehydratase (NCBI), at 4,549,659 to 4,550,843 uxuA b4323: uxuB - D-mannonate oxidoreductase, NAD-binding (NCBI), at 4,550,924 to 4,552,384 uxuB b4324: uxuR - DNA-binding transcriptional repressor (NCBI), at 4,552,599 to 4,553,372 uxuR
Group Condition b4320 b4321 b4322 b4323 b4324
fimH gntP uxuA uxuB uxuR
carbon source D-Glucuronic Acid (C) +0.0 +0.3 -4.3 -0.9 -0.8
carbon source D-Glucuronic Acid (C) -0.1 +0.3 -4.2 -0.9 -0.6
stress LB Anaerobic with Cephalothin 0.0000078125 mM -1.2 +0.1 -0.2 -0.1 -1.9
stress 2,4-Dinitrophenol 2 mM -0.1 -0.2 -0.1 -0.1 -2.8
phage Ste41 -2.2 +0.1 -0.2 -0.0 -0.5
stress 2,4-Dinitrophenol 2 mM -0.0 -0.1 +0.0 -0.2 -2.6
control PBS_cage_2_mouse_3_Cecum_40 hr -0.2 +0.0 -1.4 -0.1 -1.0
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr -0.1 -0.2 -1.2 -0.1 -0.7
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.2 +0.1 -1.1 -0.0 -1.1
control PBS_cage_1_mouse_1_Cecum_40 hr -0.2 -0.5 -0.7 -0.1 -0.7
phage Phage_N4_cage_4_mice _Feces_40 hr -0.1 -0.0 -1.2 -0.1 -0.8
lb LB -0.9 -0.1 -0.2 +0.1 -1.0
lb LB -1.2 +0.0 +0.1 -0.0 -0.9
control PBS_cage_1_mice _Feces_40 hr +0.0 -0.1 -0.7 -0.2 -1.1
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr -0.0 +0.2 -1.0 -0.2 -0.7
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.2 -0.1 -0.0 -0.4 -1.5
control PBS_cage_2_mouse_1_Cecum_40 hr -0.0 -0.2 -1.2 +0.2 -0.6
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.1 +0.0 -1.3 +0.3 -0.6
control PBS_cage_2_mice _Feces_40 hr +0.2 +0.1 -1.3 +0.1 -0.8
stress LB Aerobic with Ramoplanin 0.000125 mM -0.3 +0.4 +0.2 -0.2 -1.2
control PBS_cage_2_mouse_2_Cecum_40 hr +0.2 +0.1 -1.3 +0.6 -0.6
phage Ste41 -1.6 -0.3 +0.5 +0.3 +0.2
msc 22hr_MSC_rep1_highinoculum +2.0 -0.0 +0.0 +0.2 -0.1
msc 22hr_MSC_rep2_lowinoculum +1.9 +0.1 +0.0 -0.0 +0.2
msc 22hr_MSC_rep1_lowinoculum +2.2 +0.0 -0.1 -0.1 +0.1
msc 22hr_mediaonly_rep1_lowinoculum +2.3 -0.1 +0.1 -0.1 +0.2
msc 22hr_MSC_rep2_highinoculum +2.4 +0.0 +0.1 +0.0 +0.1
msc 22hr_mediaonly_rep1_highinoculum +2.3 +0.1 +0.1 +0.0 +0.3
msc 22hr_mediaonly_rep2_highinoculum +2.7 +0.0 +0.2 -0.0 +0.2
msc 22hr_mediaonly_rep2_lowinoculum +2.9 -0.1 +0.2 +0.2 +0.2
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