Fitness for 5 genes in Escherichia coli BW25113

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500 ntfimI and fimC are separated by 36 nucleotidesfimC and fimD are separated by 66 nucleotidesfimD and fimF are separated by 9 nucleotidesfimF and fimG are separated by 12 nucleotides b4315: fimI - fimbrial protein (VIMSS), at 4,541,751 to 4,542,290 fimI b4316: fimC - periplasmic chaperone, required for type 1 fimbriae (VIMSS), at 4,542,327 to 4,543,052 fimC b4317: fimD - outer membrane usher protein, type 1 fimbrial synthesis (NCBI), at 4,543,119 to 4,545,755 fimD b4318: fimF - minor component of type 1 fimbriae (NCBI), at 4,545,765 to 4,546,295 fimF b4319: fimG - minor component of type 1 fimbriae (NCBI), at 4,546,308 to 4,546,811 fimG
Group Condition b4315 b4316 b4317 b4318 b4319
fimI fimC fimD fimF fimG
phage Ste41 -0.4 -2.0 -1.5 N.D. -3.4
phage Ste41 -0.2 -1.9 -1.4 N.D. -2.0
lb LB -0.8 -1.1 -1.1 N.D. -1.2
lb LB -0.7 -1.1 -1.1 N.D. -1.0
stress LB Aerobic with Ramoplanin 0.000125 mM -0.8 -2.8 -0.2 N.D. +0.2
stress LB Aerobic with Ramoplanin 0.000125 mM -1.1 -2.2 -0.1 N.D. -0.2
stress LB Anaerobic with Zinc Pyrithione 0.0000025 mM -0.4 -0.7 -0.8 N.D. -0.9
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.5 -0.5 -0.8 N.D. -0.9
lb LB, Anaerobic -0.5 -0.8 -0.6 N.D. -0.8
lb LB -0.6 -0.7 -0.7 N.D. -0.7
predation 3 hr rep1_Tiberius_100fold_dilution -0.4 -0.9 -0.9 N.D. -0.4
fr_1000_f3 Fr_1000_F3 -0.1 -0.9 -0.8 N.D. -0.7
predation 3 hr rep1_Tiberius_100fold_dilution -0.2 -0.8 -0.9 N.D. -0.4
nopredatorcontrol 3 hr NoPredatorControl -0.2 -0.9 -0.9 N.D. -0.5
predation 3 hr rep1_Tiberius_10fold_dilution -0.2 -0.7 -0.7 N.D. -0.6
predation 3 hr rep1_HD100_10fold_dilution -0.3 -0.5 -0.5 N.D. -0.7
predation 3 hr rep1_Tiberius_10fold_dilution -0.3 -0.6 -0.6 N.D. -0.6
nopredatorcontrol 3 hr NoPredatorControl -0.4 -0.7 -0.6 N.D. -0.4
stress LB Anaerobic with Sulfamonomethoxine 0.00003125 mM -0.5 -0.5 -0.6 N.D. -0.5
predation 3 hr rep1_HD100_100fold_dilution -0.3 -0.7 -0.6 N.D. -0.4
stress LB Anaerobic with Norfloxacin 0.0000000390625 mM -0.2 -0.7 -0.7 N.D. -0.3
phage LB -0.4 -0.5 -0.6 N.D. -0.5
msc 22hr_mediaonly_rep1_highinoculum +0.3 -1.4 -1.4 N.D. +2.5
msc 22hr_mediaonly_rep1_lowinoculum +0.3 -1.1 -1.3 N.D. +2.5
msc 22hr_mediaonly_rep2_highinoculum +0.4 -1.3 -1.4 N.D. +3.1
msc 22hr_MSC_rep2_lowinoculum +0.2 -0.7 -0.8 N.D. +2.3
msc 22hr_mediaonly_rep2_lowinoculum +0.3 -1.1 -1.3 N.D. +3.2
msc 22hr_MSC_rep1_highinoculum +0.5 -0.4 -0.7 N.D. +2.0
msc 22hr_MSC_rep2_highinoculum +0.4 -0.8 -1.1 N.D. +2.9
msc 22hr_MSC_rep1_lowinoculum +0.4 -0.5 -0.7 N.D. +2.7
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