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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
fimB and fimE are separated by 477 nucleotides
fimE and fimA are separated by 481 nucleotides
fimA and fimI are separated by 64 nucleotides
fimI and fimC are separated by 36 nucleotides
b4312: fimB - tyrosine recombinase/inversion of on/off regulator of fimA (NCBI), at 4,538,980 to 4,539,582
fimB
b4313: fimE - tyrosine recombinase/inversion of on/off regulator of fimA (NCBI), at 4,540,060 to 4,540,656
fimE
b4314: fimA - major type 1 subunit fimbrin (pilin) (NCBI), at 4,541,138 to 4,541,686
fimA
b4315: fimI - fimbrial protein (VIMSS), at 4,541,751 to 4,542,290
fimI
b4316: fimC - periplasmic chaperone, required for type 1 fimbriae (VIMSS), at 4,542,327 to 4,543,052
fimC
Group
Condition
b4312
b4313
b4314
b4315
b4316
fimB
fimE
fimA
fimI
fimC
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.2
-1.2
+0.5
-0.8
-2.8
phage
Ste41
-0.8
+3.3
-3.4
-0.4
-2.0
phage
Ste41
-0.9
+3.4
-3.1
-0.2
-1.9
msc
22hr_mediaonly_rep1_highinoculum
-1.4
+2.6
-1.4
+0.3
-1.4
lb
LB
-1.0
+3.2
-1.3
-0.8
-1.1
lb
LB
-1.0
+3.2
-1.3
-0.7
-1.1
msc
22hr_mediaonly_rep2_highinoculum
-1.1
+2.8
-1.5
+0.4
-1.3
msc
22hr_mediaonly_rep2_lowinoculum
-1.1
+2.9
-1.4
+0.3
-1.1
msc
22hr_MSC_rep2_highinoculum
-1.1
+2.2
-1.0
+0.4
-0.8
lb
LB
-0.8
+2.7
-0.6
-0.6
-0.7
msc
22hr_mediaonly_rep1_lowinoculum
-1.0
+2.9
-1.0
+0.3
-1.1
fr_1000_f3
Fr_1000_F3
-0.8
+3.2
-0.8
-0.1
-0.9
predation
3 hr rep1_Tiberius_100fold_dilution
-0.7
+4.4
-1.0
-0.4
-0.9
phage
LB
-0.4
+3.5
-0.5
-0.4
-0.5
predation
3 hr rep1_HD100_100fold_dilution
-0.7
+3.9
-0.6
-0.3
-0.7
predation
3 hr rep1_Tiberius_100fold_dilution
-0.7
+4.2
-0.7
-0.2
-0.8
predation
3 hr rep1_HD100_10fold_dilution
-0.7
+3.8
-0.5
-0.3
-0.5
nopredatorcontrol
3 hr NoPredatorControl
-0.8
+4.4
-0.8
-0.2
-0.9
predation
3 hr rep1_Tiberius_10fold_dilution
-0.7
+4.0
-0.6
-0.3
-0.6
nopredatorcontrol
3 hr NoPredatorControl
-0.6
+3.9
-0.4
-0.4
-0.7
predation
3 hr rep1_HD100_10fold_dilution
-0.7
+3.8
-0.5
-0.1
-0.6
predation
3 hr rep1_Tiberius_10fold_dilution
-0.7
+4.4
-0.6
-0.2
-0.7
predation
3 hr rep1_HD100_no_dilution
-0.6
+4.0
-0.5
-0.1
-0.5
predation
3 hr rep1_Tiberius_no_dilution
-0.5
+4.2
-0.6
-0.1
-0.5
predation
3 hr rep1_HD100_100fold_dilution
-0.6
+4.1
-0.6
-0.1
-0.3
mixed community
Mixed culture; Bdellovibrio bacteriovorus HD100 1:1 starting OD to Ecoli; 0.02X nutrient broth; outgrowth in LBwithKan
-0.3
+4.0
-0.3
-0.3
-0.3
micoeukaryotes
Tetrahymena sp., Mixed culture-1
-0.3
+4.1
-0.4
-0.4
-0.1
mixed community
Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:10 starting OD to Ecoli; 0.02X nutrient broth; outgrowth in LBwithKan
-0.4
+4.7
-0.3
-0.1
-0.3
mixed community
Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:10 starting OD to Ecoli; 0.02X nutrient broth; outgrowth in LBwithKan
-0.3
+5.1
-0.3
-0.1
-0.2
nopredatorcontrol
48 hr NoPredatorControl
-0.4
+5.3
-0.4
+0.1
-0.5
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