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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yjhY and yjhP are separated by 126 nucleotides
yjhP and yjhQ are separated by 55 nucleotides
yjhQ and yjhX are separated by 11 nucleotides
yjhX and yjhZ are separated by 376 nucleotides
b4656: yjhY - no description, at 4,530,073 to 4,530,333
yjhY
b4306: yjhP - KpLE2 phage-like element; predicted methyltransferase (NCBI), at 4,530,460 to 4,531,206
yjhP
b4307: yjhQ - KpLE2 phage-like element; predicted acetyltransferase (NCBI), at 4,531,262 to 4,531,807
yjhQ
b4566: yjhX - hypothetical protein (NCBI), at 4,531,819 to 4,532,076
yjhX
b4657: yjhZ - no description, at 4,532,453 to 4,532,698
yjhZ
Group
Condition
b4656
b4306
b4307
b4566
b4657
yjhY
yjhP
yjhQ
yjhX
yjhZ
phage
Lambda_ci1857
-1.0
-0.8
-0.4
+0.0
+0.1
phage
Ste41
-0.1
-0.4
-0.9
-0.6
-0.0
phage
HSDP4
-0.5
-0.4
-0.4
-0.3
-0.2
phage
N4_phage 0.009375 MOI TC2
-0.5
-0.4
-0.4
-0.4
-0.0
phage
Δdbn_10
+0.4
-0.8
-0.2
-0.8
-0.2
stress
Ciprofloxacin Hydrochloride 0.0003 mM
-0.5
+0.3
-0.1
-0.6
-0.6
carbon source
L-Proline (C)
-0.3
+0.2
+0.0
-1.2
-0.0
carbon source
L-tyrosine (C)
-1.3
-0.4
+0.4
-0.3
+0.3
mixed community control
mixed community control
-0.8
-0.5
+0.6
-0.3
-0.3
carbon source
acetate (C)
-0.8
-0.3
+0.2
-0.3
+0.1
stress
Benzalkonium Chloride 0.004 mg/ml
-1.3
-0.6
+0.7
+0.1
+0.1
phage
T7_phage 0.00015625 MOI TC4
-0.6
+0.1
-0.2
-0.8
+0.6
carbon source
propionate (C)
-0.8
+0.2
+0.0
-0.6
+0.4
stress
Cisplatin 0.1 mg/ml
-0.5
+0.0
+0.6
-0.6
-0.1
carbon source
Inosine (C)
-0.3
+0.3
-0.8
+0.3
-0.0
phage
T7_phage 0.0015625 MOI TC1
-0.7
+0.2
-0.1
-0.3
+0.5
carbon source
carbon source D-Glucose 5mM
+0.8
-0.3
-0.0
-0.7
+0.1
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
+0.2
+0.7
+0.2
-0.7
-0.3
stress
3-methyl-1-butanol 1.25 vol%
+0.8
-0.1
-0.7
-0.1
+0.2
phage
PoolT9D29
+0.4
-0.4
+0.2
-0.3
+0.4
carbon source
carbon source D-Mannose 5mM
+0.5
-0.4
-0.1
+0.6
-0.0
motility
inner cut, LB soft agar motility assay
+0.4
-0.5
+0.4
+0.5
+0.0
no phage control
CTR
+0.5
-0.4
+0.6
+0.3
-0.2
phage
PoolT9D30
+0.2
+0.4
+0.5
+0.3
-0.3
phage
RB51m1
-0.1
+0.6
-0.2
+0.6
+0.3
no phage control
CTR
+0.7
+0.3
+0.0
+0.6
-0.1
msc
22hr_MSC_rep1_highinoculum
+0.9
-0.1
+0.3
+0.6
+0.0
no phage control
NophageCTRB12
+0.2
+0.5
+0.4
+0.8
-0.1
phage
PoolT9D23
+0.8
-0.1
+0.4
+0.6
+0.2
no phage control
NophageCTRA12
+0.5
+0.3
+0.5
+0.3
+0.5
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