Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1193 experiments or choose conditions or try the comparative fitness browser

500 ntulaC and ulaD are separated by 13 nucleotidesulaD and ulaE are separated by 9 nucleotidesulaE and ulaF overlap by 1 nucleotidesulaF and yjfY are separated by 129 nucleotides b4195: ulaC - L-ascorbate-specific enzyme IIA component of PTS (NCBI), at 4,419,731 to 4,420,195 ulaC b4196: ulaD - 3-keto-L-gulonate 6-phosphate decarboxylase (NCBI), at 4,420,209 to 4,420,859 ulaD b4197: ulaE - L-xylulose 5-phosphate 3-epimerase (NCBI), at 4,420,869 to 4,421,723 ulaE b4198: ulaF - L-ribulose 5-phosphate 4-epimerase (NCBI), at 4,421,723 to 4,422,409 ulaF b4199: yjfY - hypothetical protein (NCBI), at 4,422,539 to 4,422,814 yjfY
Group Condition b4195 b4196 b4197 b4198 b4199
ulaC ulaD ulaE ulaF yjfY
phage RB68 -1.5 -0.4 -0.3 +0.0 -0.0
carbon source carbon source D-Glucose 0.25mM -0.4 -0.4 -0.4 -0.3 -0.3
stress LB Anaerobic with Cefoxitin 0.000003125 mM -0.9 -0.2 -0.5 -0.1 -0.1
stress octanol 0.08 vol% -1.4 +0.6 -0.3 -0.6 +0.3
phage T7_phage 0.0015625 MOI TC2 +0.3 -0.8 -0.8 +0.2 -0.0
carbon source carbon source D-Mannose 0.5mM +0.0 +0.3 -0.4 -0.1 -0.8
predation 6 hr rep2_HD100_10fold_dilution_grewON +0.2 +0.2 -0.3 -0.0 -0.9
stress toluene 2.5 vol% -0.7 -0.0 -0.4 +0.4 +0.1
carbon source carbon source D-Mannose 5mM +0.6 -1.0 -0.4 +0.2 +0.0
phage T7_phage 0.00015625 MOI TC4 -0.2 -0.7 -0.1 +0.3 +0.2
nophagecontrol R1_N4_T1_phage0 -0.6 +0.6 +0.2 -0.4 -0.2
stress LB Aerobic with Hygromycin B 0.000015625 mM +0.6 -0.5 -0.4 +0.1 -0.1
stress Chlorite 1.25 mM +0.7 -0.5 +0.4 -0.3 -0.4
carbon source carbon source D-Glucose 0.25mM -0.2 +0.5 -0.4 +0.3 -0.1
control PBS_cage_1_mice _Feces_16 hr +0.4 +0.3 +0.3 -0.3 -0.6
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -0.8 +0.2 -0.0 +0.5 +0.2
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.2 +0.9 -0.3 -0.2 -0.1
msc 22hr_MSC_rep1_highinoculum +0.9 -0.6 -0.0 -0.1 +0.1
motility outer cut, LB soft agar motility assay -0.5 -0.1 -0.2 +0.6 +0.4
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -0.4 +0.1 +0.7 +0.2 -0.2
stress LB Aerobic with Zinc Pyrithione 0.00000125 mM +0.8 -0.5 -0.1 +0.3 -0.0
phage Δdbn_10 +0.9 +0.3 -0.6 +0.2 -0.0
phage Ste41 -0.0 +0.1 -0.5 +0.6 +0.5
control PBS_cage_1_mouse_1_Cecum_40 hr +0.2 +0.7 +0.5 -0.1 -0.3
motility inner cut, LB soft agar motility assay +0.7 +0.4 -0.1 +0.2 +0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.8 +0.3 +0.3 +0.3 -0.2
stress Chloramphenicol 0.001 mg/ml +1.0 +0.3 +0.3 +0.1 -0.1
stress Cisplatin 0.1 mg/ml +0.2 +1.0 -0.1 +0.3 +0.1
motility inner cut, LB soft agar motility assay +0.6 +0.6 +0.3 +0.1 -0.0
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM +1.1 +0.2 +0.2 +0.2 +0.4
remove
b4195
plot
remove
b4196
plot
remove
b4197
remove
b4198
plot
remove
b4199
plot