Fitness for 5 genes in Escherichia coli BW25113

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500 ntphnC and phnB are separated by 132 nucleotidesphnB and phnA are separated by 657 nucleotidesphnA and yjdA are separated by 400 nucleotidesyjdA and yjcZ overlap by 4 nucleotides b4106: phnC - phosphonate/organophosphate ester transporter subunit (NCBI), at 4,322,400 to 4,323,188 phnC b4107: phnB - hypothetical protein (NCBI), at 4,323,321 to 4,323,764 phnB b4108: phnA - hypothetical protein (NCBI), at 4,324,422 to 4,324,757 phnA b4109: yjdA - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 4,325,158 to 4,327,386 yjdA b4110: yjcZ - orf, hypothetical protein (VIMSS), at 4,327,383 to 4,328,261 yjcZ
Group Condition b4106 b4107 b4108 b4109 b4110
phnC phnB phnA yjdA yjcZ
phage R2_N4_T1_phage10 -0.3 -0.5 -1.5 -0.2 -0.1
motility outer cut, LB soft agar motility assay -1.0 +0.4 -1.2 -0.1 +0.5
carbon source carbon source D-Glucose 0.25mM +0.4 -0.4 -1.1 +0.0 +0.1
stress Aluminum chloride 5 mM +0.2 +0.4 -0.3 -0.2 -0.9
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.9 +0.3 +0.2 -0.2 -0.2
motility outer cut, LB soft agar motility assay +0.4 -1.0 -0.6 -0.1 +0.6
carbon source carbon source D-Mannose 1mM +0.2 +0.5 -1.1 +0.1 +0.1
phage R2_N4_T2_phage10 +0.2 +0.3 -1.1 +0.1 +0.5
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.2 -0.9 +0.4 +0.1 +0.2
stress Cisplatin 0.1 mg/ml +0.5 -0.6 +0.7 +0.0 -0.2
carbon source Ying_Nucleobase14 rep C; time point 2 -0.3 -0.3 -0.2 +0.8 +0.8
phage Ste41 -0.3 +0.9 +0.5 -0.1 -0.2
carbon source carbon source D-Mannose 5mM -0.6 +0.8 +0.4 +0.1 +0.2
carbon source carbon source D-Glucose 0.25mM +0.6 -0.2 +0.8 -0.4 +0.1
carbon source Ying_Nucleobase14 rep A; time point 2 -0.5 +0.0 -0.1 +0.7 +0.9
carbon source Ying_AminoAcid20 rep A; time point 3 -0.2 +0.1 -0.2 +0.6 +0.8
carbon source Ying_Nucleobase14 rep B; time point 3 -0.5 -0.5 -0.6 +1.4 +1.5
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.3 -0.0 -0.3 +1.2 +1.1
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.3 -0.0 +0.0 +1.1 +0.9
carbon source Ying_Nucleobase14 rep C; time point 3 -0.4 +0.0 -0.4 +1.1 +1.3
stress Benzalkonium Chloride 0.004 mg/ml -0.0 +0.6 +0.7 +0.1 +0.3
carbon source Ying_Nucleobase14 rep A; time point 3 -0.2 -0.1 -0.5 +1.2 +1.4
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.6 +0.5 +0.9 -0.1 -0.0
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.0 -0.1 -0.6 +1.3 +1.3
phage N4_phage 0.00009375 MOI TC4 +0.8 +0.4 +0.0 +0.4 +0.5
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.2 +0.3 -0.5 +1.2 +1.3
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.3 +0.0 -0.6 +1.5 +1.5
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.0 +0.1 -0.3 +1.4 +1.5
phage N4_phage 0.009375 MOI TC2 +0.8 +0.6 +0.5 +0.6 +0.4
stress Phosphomycin 0.001 mg/ml +4.9 -0.3 +0.2 +0.1 +0.0
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