Fitness for 5 genes in Escherichia coli BW25113

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500 ntyjbQ and yjbR are separated by 3 nucleotidesyjbR and uvrA are separated by 34 nucleotidesuvrA and ssb are separated by 253 nucleotidesssb and yjcB are separated by 98 nucleotides b4056: yjbQ - hypothetical protein (NCBI), at 4,268,261 to 4,268,677 yjbQ b4057: yjbR - hypothetical protein (NCBI), at 4,268,681 to 4,269,037 yjbR b4058: uvrA - excinuclease ABC subunit A (NCBI), at 4,269,072 to 4,271,894 uvrA b4059: ssb - single-strand DNA-binding protein (NCBI), at 4,272,148 to 4,272,684 ssb b4060: yjcB - orf, hypothetical protein (VIMSS), at 4,272,783 to 4,273,064 yjcB
Group Condition b4056 b4057 b4058 b4059 b4060
yjbQ yjbR uvrA ssb yjcB
stress LB Anaerobic with Furaltadone 0.000015625 mM -0.0 +0.2 -5.5 N.D. -0.1
stress Cisplatin 0.1 mg/ml -0.1 -0.0 -5.6 N.D. +0.4
stress LB Aerobic with Nitrofurantoin 0.00003125 mM +0.0 -0.2 -5.3 N.D. +0.2
stress LB Anaerobic with Furaltadone 0.000015625 mM +0.2 +0.1 -4.9 N.D. -0.5
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -0.0 +0.6 -5.3 N.D. +0.0
stress Cisplatin 0.1 mg/ml -0.6 -0.2 -3.6 N.D. -0.4
stress Cisplatin 0.1 mg/ml +0.2 -0.5 -4.3 N.D. +0.1
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM +0.1 -0.3 -4.3 N.D. +0.1
stress Cisplatin 0.05 mg/ml +0.0 -0.2 -3.4 N.D. -0.5
stress 2-nitrobenzenesulfonyl fluoride -0.3 -0.0 -3.7 N.D. +0.2
stress Cisplatin 0.1 mg/ml -0.1 +0.4 -3.5 N.D. +0.1
stress Cisplatin 0.1 mg/ml -0.3 +0.2 -2.9 N.D. +0.1
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM -0.4 -0.1 -2.2 N.D. -0.3
stress Cisplatin 0.05 mg/ml -0.2 -0.3 -2.3 N.D. -0.1
stress LB Anaerobic with Furaltadone 0.00000390625 mM +0.1 -0.2 -2.5 N.D. -0.2
stress Cisplatin 0.025 mg/ml -0.1 +0.2 -2.6 N.D. -0.3
stress 3-methyl-3-butenol 0.625 vol% -0.1 +0.2 -2.4 N.D. -0.2
stress Cisplatin 0.05 mg/ml -0.0 -0.1 -2.1 N.D. -0.0
stress 3-methyl-3-butenol 0.625 vol% +0.2 +0.1 -2.2 N.D. -0.0
stress Cisplatin 0.05 mg/ml -0.1 +0.1 -1.7 N.D. -0.3
carbon source carbon source D-Glucose 0.25mM -0.6 -0.5 +0.4 N.D. -1.0
carbon source a-Ketoglutaric (C) +0.7 -1.4 -0.6 N.D. -0.1
carbon source carbon source D-Mannose 5mM -0.1 -1.8 +0.4 N.D. +0.4
stress 3-methyl-2-butenol 1.25 vol% +0.4 +0.2 -1.5 N.D. -0.1
carbon source a-Ketoglutaric (C) +0.7 -1.0 -0.6 N.D. -0.0
phage Ste41 -0.5 +0.9 +0.0 N.D. -0.9
stress Chlorite 1.25 mM +0.5 +0.3 +0.6 N.D. -0.8
stress 2-Furfuraldehyde 0.25 vol% +0.3 -0.2 +1.3 N.D. -0.3
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.2 -0.3 +1.2 N.D. +0.5
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.0 +0.7 +0.8 N.D. +1.2
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