Fitness for 5 genes in Escherichia coli BW25113

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500 ntudhA and fabR are separated by 333 nucleotidesfabR and yijD overlap by 1 nucleotidesyijD and trmA are separated by 39 nucleotidestrmA and btuB are separated by 368 nucleotides b3962: udhA - putative oxidoreductase (VIMSS), at 4,157,413 to 4,158,813 udhA b3963: fabR - DNA-binding transcriptional repressor (RefSeq), at 4,159,147 to 4,159,794 fabR b3964: yijD - conserved inner membrane protein (NCBI), at 4,159,794 to 4,160,153 yijD b3965: trmA - tRNA (uracil-5-)-methyltransferase (NCBI), at 4,160,193 to 4,161,293 trmA b3966: btuB - vitamin B12/cobalamin outer membrane transporter (NCBI), at 4,161,662 to 4,163,506 btuB
Group Condition b3962 b3963 b3964 b3965 b3966
udhA fabR yijD trmA btuB
micoeukaryotes Dictyostellum sp.mixed culture-2 -4.5 -0.6 -0.1 -0.2 -0.0
micoeukaryotes Acanthamoeba sp., muxed culture-1 -4.5 -0.7 -0.0 -0.0 -0.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 -4.2 -0.5 -0.0 -0.2 -0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -4.3 -0.5 -0.0 -0.3 -0.0
carbon source acetate (C) -4.3 +0.3 +0.2 -0.6 -0.4
micoeukaryotes Tetrahymena sp., Mixed culture-1 -3.9 -0.8 +0.1 -0.1 -0.1
stress 2,4-Dinitrophenol 2 mM -2.4 -1.9 -0.1 -0.1 -0.1
nitrogen source D-Serine (N) -3.6 +0.0 -0.1 -0.3 -0.6
stress 2,4-Dinitrophenol 2 mM -2.6 -1.7 -0.0 -0.2 +0.0
nitrogen source Putrescine (N) -3.8 -0.0 -0.1 -0.3 -0.2
nitrogen source L-Alanine (N) -4.0 -0.2 +0.1 -0.1 -0.1
nitrogen source L-Alanine (N) -3.9 +0.1 -0.1 -0.2 -0.2
control NoPredeControl -3.7 -0.2 -0.1 -0.2 -0.1
nitrogen source D-Serine (N) -3.5 +0.0 +0.2 -0.3 -0.7
carbon source D-Maltose (C) -3.6 +0.0 +0.0 -0.2 -0.4
carbon source D-Xylose (C) -3.3 +0.1 +0.1 -0.4 -0.7
carbon source acetate (C) -3.9 +0.3 +0.2 -0.4 -0.3
nitrogen source Putrescine (N) -3.9 +0.0 +0.1 -0.1 -0.1
carbon source L-Malic (C) -3.9 +0.4 +0.2 +0.2 -0.7
carbon source succinate (C) -3.8 +0.2 +0.3 +0.1 -0.5
carbon source succinate (C) -3.6 +0.2 +0.3 +0.1 -0.5
carbon source Acetate (C) -3.6 -0.1 +0.3 -0.2 +0.1
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.2 -3.0 -0.7 +0.5 -0.0
carbon source L-Malic (C) -3.7 +0.4 +0.4 +0.1 -0.5
stress LB Aerobic with Ramoplanin 0.000125 mM -1.2 -2.0 -0.8 +0.5 +0.2
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM +0.1 -3.5 -0.6 +0.6 +0.1
stress LB Aerobic with Ramoplanin 0.000125 mM -1.1 -1.8 -0.7 +0.7 -0.0
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.7 -4.5 +0.5 +0.5 +0.1
stress Benzalkonium Chloride 0.004 mg/ml +0.8 -1.1 -0.8 -0.9 -0.7
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.9 +2.2 +0.4 -0.5 -0.2
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