Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1179 experiments or choose conditions or try the comparative fitness browser

500 ntoxyR and udhA overlap by 18 nucleotidesudhA and fabR are separated by 333 nucleotidesfabR and yijD overlap by 1 nucleotidesyijD and trmA are separated by 39 nucleotides b3961: oxyR - DNA-binding transcriptional dual regulator (NCBI), at 4,156,513 to 4,157,430 oxyR b3962: udhA - putative oxidoreductase (VIMSS), at 4,157,413 to 4,158,813 udhA b3963: fabR - DNA-binding transcriptional repressor (RefSeq), at 4,159,147 to 4,159,794 fabR b3964: yijD - conserved inner membrane protein (NCBI), at 4,159,794 to 4,160,153 yijD b3965: trmA - tRNA (uracil-5-)-methyltransferase (NCBI), at 4,160,193 to 4,161,293 trmA
Group Condition b3961 b3962 b3963 b3964 b3965
oxyR udhA fabR yijD trmA
control 20 hr rep1_No_BD100_grewON -8.4 -0.3 -0.1 -0.4 -0.3
nophagecontrol NoPhageControl -8.2 -0.7 +0.0 -0.2 +0.0
phage P2_phage_0.5625_MOI -8.0 -0.7 -0.4 +0.2 -0.1
control 20 hr rep2_No_BD100_grewON -7.8 -0.2 +0.0 -0.5 -0.2
carbon source acetate (C) -3.7 -4.3 +0.3 +0.2 -0.6
stress undecene 5 vol% -5.5 -0.8 -1.0 -0.4 +0.5
stress undecene 5 vol% -5.4 -1.0 -1.2 -0.2 +0.5
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -6.0 +0.1 -0.3 -0.4 -0.4
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -5.4 -0.5 -0.6 -0.0 -0.2
stress undecene 2.5 vol% -4.7 -0.7 -1.5 -0.2 +0.4
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -5.9 -0.2 -0.1 -0.0 -0.1
stress undecene 2.5 vol% -4.3 -0.9 -1.1 -0.2 +0.3
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -5.0 -0.2 -0.3 -0.2 -0.3
carbon source acetate (C) -1.8 -3.9 +0.3 +0.2 -0.4
stress Spectinomycin 0.0125 mg/ml -3.2 -2.4 -0.1 +0.5 +0.0
stress methylglyoxal 0.008 vol% -5.4 +0.8 -0.1 +0.1 -0.1
stress 1-ethyl-3-methylimidazolium chloride 80 mM -4.3 +1.0 -0.3 +0.1 -0.4
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.5 +0.7 -4.5 +0.5 +0.5
plasmid transformation mariner vector transformation; liquid outgrowth assay +5.8 +0.7 -0.5 +0.4 -0.3
plasmid transformation vcDART vector transformation; liquid outgrowth assay +6.7 +0.3 -0.5 +0.2 -0.4
plasmid transformation vcDART vector transformation; liquid outgrowth assay +6.4 +0.3 -0.5 +0.4 -0.2
plasmid transformation mariner vector transformation; liquid outgrowth assay +6.7 +0.6 -0.5 +0.5 -0.4
plasmid transformation mariner vector transformation; liquid outgrowth assay +7.3 +0.2 -0.4 +0.2 -0.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay +7.1 +0.8 -0.4 +0.0 -0.2
plasmid transformation vcDART vector transformation; agar assay +7.1 -0.3 -0.0 +0.4 +0.3
plasmid transformation mariner vector transformation; agar assay +7.1 -0.4 +0.2 +0.2 +0.5
plasmid transformation mariner vector transformation; agar assay +7.2 -0.4 +0.1 +0.3 +0.5
plasmid transformation vcDART vector transformation; agar assay +7.4 -0.4 +0.1 +0.4 +0.4
plasmid transformation vcDART vector transformation; agar assay +7.3 -0.3 +0.2 +0.4 +0.4
plasmid transformation mariner vector transformation; agar assay +7.3 -0.4 +0.2 +0.4 +0.5
remove
b3961
plot		 remove
b3962
plot		 remove
b3963		 remove
b3964
plot		 remove
b3965
plot