Fitness for 5 genes in Escherichia coli BW25113

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500 ntyijP and ppc are separated by 181 nucleotidesppc and argE are separated by 597 nucleotidesargE and argC are separated by 153 nucleotidesargC and argB are separated by 7 nucleotides b3955: yijP - conserved inner membrane protein (NCBI), at 4,146,555 to 4,148,288 yijP b3956: ppc - phosphoenolpyruvate carboxylase (NCBI), at 4,148,470 to 4,151,121 ppc b3957: argE - acetylornithine deacetylase (NCBI), at 4,151,719 to 4,152,870 argE b3958: argC - N-acetyl-gamma-glutamyl-phosphate reductase (NCBI), at 4,153,024 to 4,154,028 argC b3959: argB - acetylglutamate kinase (RefSeq), at 4,154,036 to 4,154,812 argB
Group Condition b3955 b3956 b3957 b3958 b3959
yijP ppc argE argC argB
carbon source Ying_sugar7 rep A; time point 3 +0.0 -8.9 -9.4 -9.5 -9.2
carbon source Ying_sugar7 rep B; time point 3 +0.1 -8.9 -9.4 -9.3 -9.2
carbon source Ying_sugar7 rep C; time point 3 +0.1 -8.8 -8.9 -9.4 -8.6
carbon source Ying_sugar7 rep A; time point 2 +0.1 -9.1 -8.3 -9.2 -8.3
carbon source Ying_sugar7 rep C; time point 2 +0.1 -8.8 -8.6 -8.8 -8.3
carbon source Ying_sugar7 rep B; time point 2 +0.1 -9.0 -8.3 -8.5 -7.7
carbon source carbon source D-Mannose 0.5mM -0.1 -7.8 -5.9 -6.3 -8.0
carbon source carbon source D-Glucose 0.25mM +0.1 -6.8 -5.4 -6.9 -5.9
carbon source Glucose (C) +0.0 -6.4 -6.4 -5.8 -6.1
carbon source carbon source D-Glucose 5mM -0.0 -5.3 -4.9 -6.2 -8.0
carbon source carbon source D-Mannose 0.5mM -0.0 -7.7 -6.8 -4.9 -4.3
carbon source carbon source D-Mannose 1mM -0.1 -7.5 -5.3 -5.8 -4.7
carbon source Glucose (C) -0.0 -6.0 -5.9 -5.4 -5.8
carbon source carbon source D-Glucose 1mM +0.1 -6.6 -4.9 -5.8 -5.6
carbon source carbon source D-Mannose 20mM -0.0 -7.2 -5.1 -5.1 -4.8
nitrogen source D-Alanine (N) -0.0 -5.4 -5.6 -5.6 -5.2
carbon source carbon source D-Glucose 0.5mM -0.1 -5.9 -5.2 -5.4 -4.9
sulfur source M63 no sulfur + 5 mM sulfate +0.1 -5.5 -5.0 -5.4 -5.1
sulfur source M63 no sulfur + 5 mM L-cys +0.1 -5.8 -5.2 -4.9 -4.8
carbon source carbon source D-Glucose 0.25mM -0.0 -4.6 -6.8 -4.6 -4.4
carbon source carbon source D-Mannose 1mM -0.0 -7.1 -3.4 -5.6 -4.3
carbon source carbon source D-Mannose 20mM -0.0 -6.9 -4.5 -5.1 -3.8
carbon source carbon source D-Glucose 1mM -0.1 -5.5 -4.6 -4.6 -5.4
sulfur source M63 no sulfur + 5 mM sulfate +0.1 -5.6 -4.9 -5.1 -4.6
carbon source D-Glucose-6-Phosphate (C) +0.1 -4.5 -5.1 -5.1 -4.9
carbon source Carbon source D-Glucose 10 mM +0.0 -5.3 -5.5 -4.5 -4.2
carbon source carbon source D-Mannose 5mM -0.2 -6.0 -4.8 -4.5 -3.9
carbon source D-Glucose (C) MOPS +0.0 -4.5 -4.8 -5.5 -4.6
carbon source carbon source D-Glucose 0.5mM +0.1 -5.7 -4.4 -4.2 -5.0
nitrogen source Gly-DL-Asp (N) +0.1 -0.5 -6.2 -6.8 -5.9
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