Fitness for 5 genes in Escherichia coli BW25113

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500 ntfrwD and yijO overlap by 14 nucleotidesyijO and yijP are separated by 214 nucleotidesyijP and ppc are separated by 181 nucleotidesppc and argE are separated by 597 nucleotides b3953: frwD - predicted enzyme IIB component of PTS (NCBI), at 4,145,161 to 4,145,502 frwD b3954: yijO - predicted DNA-binding transcriptional regulator (NCBI), at 4,145,489 to 4,146,340 yijO b3955: yijP - conserved inner membrane protein (NCBI), at 4,146,555 to 4,148,288 yijP b3956: ppc - phosphoenolpyruvate carboxylase (NCBI), at 4,148,470 to 4,151,121 ppc b3957: argE - acetylornithine deacetylase (NCBI), at 4,151,719 to 4,152,870 argE
Group Condition b3953 b3954 b3955 b3956 b3957
frwD yijO yijP ppc argE
carbon source Ying_sugar7 rep B; time point 3 +0.0 +0.1 +0.1 -8.9 -9.4
carbon source Ying_sugar7 rep A; time point 3 +0.1 -0.0 +0.0 -8.9 -9.4
carbon source Ying_sugar7 rep C; time point 3 +0.1 +0.1 +0.1 -8.8 -8.9
carbon source Ying_sugar7 rep A; time point 2 +0.1 +0.1 +0.1 -9.1 -8.3
carbon source Ying_sugar7 rep B; time point 2 -0.0 +0.1 +0.1 -9.0 -8.3
carbon source Ying_sugar7 rep C; time point 2 +0.2 +0.1 +0.1 -8.8 -8.6
carbon source carbon source D-Mannose 0.5mM -0.1 +0.1 -0.0 -7.7 -6.8
carbon source carbon source D-Mannose 0.5mM +0.4 +0.0 -0.1 -7.8 -5.9
carbon source carbon source D-Mannose 1mM +0.1 +0.2 -0.1 -7.5 -5.3
carbon source Glucose (C) +0.0 +0.0 +0.0 -6.4 -6.4
carbon source carbon source D-Mannose 20mM +0.1 -0.0 -0.0 -7.2 -5.1
carbon source carbon source D-Glucose 0.25mM +0.2 +0.2 +0.1 -6.8 -5.4
carbon source Glucose (C) +0.1 +0.1 -0.0 -6.0 -5.9
carbon source carbon source D-Glucose 1mM +0.1 +0.0 +0.1 -6.6 -4.9
carbon source carbon source D-Mannose 20mM +0.0 +0.1 -0.0 -6.9 -4.5
carbon source carbon source D-Mannose 5mM -0.4 -0.2 +0.1 -6.5 -4.1
carbon source carbon source D-Glucose 0.25mM +0.2 -0.0 -0.0 -4.6 -6.8
carbon source carbon source D-Mannose 5mM -0.1 +0.0 -0.2 -6.0 -4.8
carbon source carbon source D-Glucose 0.5mM +0.2 -0.1 -0.1 -5.9 -5.2
sulfur source M63 no sulfur + 5 mM L-cys -0.1 -0.1 +0.1 -5.8 -5.2
nitrogen source D-Alanine (N) +0.1 +0.1 -0.0 -5.4 -5.6
carbon source Carbon source D-Glucose 10 mM +0.1 +0.1 +0.0 -5.3 -5.5
carbon source carbon source D-Mannose 1mM -0.0 -0.0 -0.0 -7.1 -3.4
sulfur source M63 no sulfur + 5 mM sulfate -0.1 -0.0 +0.1 -5.6 -4.9
carbon source Ying_Nucleobase14 rep C; time point 3 +0.2 +0.1 +0.0 -8.0 -2.6
sulfur source M63 no sulfur + 5 mM sulfate +0.1 -0.0 +0.1 -5.5 -5.0
carbon source Ying_Nucleobase14 rep A; time point 3 +0.0 +0.1 +0.2 -8.1 -2.4
carbon source Ying_Nucleobase14 rep B; time point 3 +0.2 +0.1 +0.1 -7.8 -2.5
carbon source carbon source D-Glucose 0.5mM +0.4 -0.1 +0.1 -5.7 -4.4
protonated/deuterated protonated control +0.2 +0.2 +0.2 -5.1 -5.0
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