Fitness for 5 genes in Escherichia coli BW25113

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500 ntfpr and glpX are separated by 96 nucleotidesglpX and glpK are separated by 134 nucleotidesglpK and glpF are separated by 22 nucleotidesglpF and yiiU are separated by 424 nucleotides b3924: fpr - ferredoxin-NADP reductase (NCBI), at 4,111,749 to 4,112,495 fpr b3925: glpX - fructose 1,6-bisphosphatase II (NCBI), at 4,112,592 to 4,113,602 glpX b3926: glpK - glycerol kinase (NCBI), at 4,113,737 to 4,115,245 glpK b3927: glpF - glycerol facilitator (NCBI), at 4,115,268 to 4,116,113 glpF b3928: yiiU - hypothetical protein (NCBI), at 4,116,538 to 4,116,783 yiiU
Group Condition b3924 b3925 b3926 b3927 b3928
fpr glpX glpK glpF yiiU
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.0 -0.4 -3.8 -2.1 -0.1
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.1 -0.4 -4.1 -1.9 +0.4
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.0 -0.3 -3.3 -2.0 +0.3
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.3 -0.3 -3.1 -1.9 +0.4
carbon source HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 mM (C) -0.1 +0.0 -3.1 -2.2 +0.3
stress M9 Aerobic Capecitabine 5000 uM -2.0 +0.0 -2.0 -0.7 -0.2
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.0 -0.3 -3.0 -1.6 +0.2
carbon source HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) -0.3 -0.2 -2.5 -1.7 -0.0
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.1 -0.2 -3.1 -1.6 +0.2
stress M9 Aerobic Capecitabine 5000 uM -2.0 -0.0 -1.9 -0.5 +0.0
carbon source HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 mM (C) +0.2 -0.3 -2.6 -1.8 +0.4
stress LB Aerobic with Ramoplanin 0.000125 mM -0.1 +0.3 +1.2 +0.7 -5.7
stress M9 Anaerobic Capecitabine 5000 uM -1.1 -0.0 -1.6 -0.5 -0.2
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.4 -0.2 -1.2 -0.2 -1.8
stress Bacitracin 1 mg/ml +0.4 +0.0 -0.0 -0.3 -3.1
sir2-hera SIR2-HerA +0.3 -0.0 -0.2 -2.4 -0.5
stress LB Aerobic with Ramoplanin 0.000125 mM -0.0 +0.2 +1.0 +0.7 -4.6
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM -2.8 -0.1 +0.5 +0.1 -0.4
stress Bacitracin 0.5 mg/ml -0.1 +0.0 +0.2 +0.3 -3.0
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM -2.8 -0.2 +0.6 +0.2 -0.3
drt_type_3 DRT_type_3 +0.6 +0.1 -0.2 -2.5 -0.2
mzaabcde mzaABCDE +0.6 +0.1 -0.1 -2.1 -0.6
mzaabcde mzaABCDE +0.5 +0.2 -0.3 -2.3 -0.1
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.0 -0.0 +0.7 +0.3 -3.0
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.2 +0.0 +0.3 +0.4 -2.7
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM +0.3 +0.2 +0.8 +0.3 -3.2
predation 6 hr rep2_HD100_10fold_dilution_grewON +0.4 +0.2 +0.1 +0.3 -2.4
phage T7_phage 0.0015625 MOI TC2 -0.5 -0.5 -0.1 -0.5 +2.0
carbon source succinate (C) -0.3 +0.2 +1.4 +0.9 -0.7
stress Phosphomycin 0.001 mg/ml -0.1 -0.1 +5.5 +0.8 +0.1
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