Fitness for 5 genes in Escherichia coli BW25113

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500 ntfieF and pfkA are separated by 180 nucleotidespfkA and sbp are separated by 319 nucleotidessbp and cdh are separated by 106 nucleotidescdh and tpiA are separated by 54 nucleotides b3915: fieF - ferrous iron efflux protein F (NCBI), at 4,104,492 to 4,105,394 fieF b3916: pfkA - 6-phosphofructokinase (NCBI), at 4,105,575 to 4,106,537 pfkA b3917: sbp - sulfate transporter subunit (NCBI), at 4,106,857 to 4,107,846 sbp b3918: cdh - CDP-diacylglycerol pyrophosphatase (NCBI), at 4,107,953 to 4,108,708 cdh b3919: tpiA - triosephosphate isomerase (NCBI), at 4,108,763 to 4,109,530 tpiA
Group Condition b3915 b3916 b3917 b3918 b3919
fieF pfkA sbp cdh tpiA
carbon source Ying_sugar7 rep B; time point 3 +0.0 -3.7 -1.4 +0.0 N.D.
carbon source Ying_sugar7 rep C; time point 3 -0.1 -3.5 -1.4 +0.1 N.D.
nutrient M9 Glucose 0.2%, Thauer's vit mix -0.5 -4.5 +0.0 +0.1 N.D.
motility outer cut, LB soft agar motility assay -0.9 -3.9 -0.1 +0.2 N.D.
carbon source Ying_sugar7 rep C; time point 2 -0.1 -3.8 -0.8 +0.0 N.D.
carbon source Ying_sugar7 rep A; time point 3 -0.1 -3.6 -0.8 -0.0 N.D.
carbon source Ying_sugar7 rep B; time point 2 -0.1 -3.8 -0.7 +0.1 N.D.
carbon source Ying_sugar7 rep A; time point 2 -0.2 -3.8 -0.5 +0.1 N.D.
M9 Glucose 2% aerobic -0.0 -4.4 -0.1 +0.1 N.D.
M9 Glucose 2% aerobic +0.0 -4.4 -0.0 +0.1 N.D.
protonated/deuterated protonated control -0.0 -4.3 +0.0 -0.0 N.D.
stress octanol 0.08 vol% +0.2 -4.1 +0.1 -0.5 N.D.
carbon source Glucose (C) -0.1 -4.0 -0.1 +0.0 N.D.
carbon source Carbon source D-Glucose 10 mM -0.1 -3.9 -0.2 +0.0 N.D.
nutrient M9 Glucose 0.2%, Thauer's vit mix without biotin with Avidin -0.4 -3.7 +0.1 +0.1 N.D.
carbon source Glucose (C) +0.1 -3.9 -0.2 +0.1 N.D.
protonated/deuterated protonated glucose in D2O +0.0 -4.0 +0.2 -0.0 N.D.
carbon source Ying_Nucleobase14 rep C; time point 2 -0.1 -3.7 +0.3 -0.1 N.D.
drt_type_3 DRT_type_3 -0.1 -3.6 +0.2 +0.3 N.D.
retron_ec_48_control retron_Ec_48_control -0.0 -3.7 +0.2 +0.2 N.D.
control PBS_cage_2_mice _Feces_40 hr +0.1 -3.7 +0.3 +0.2 N.D.
ppi ppI -0.0 -3.7 +0.3 +0.4 N.D.
ppi ppI +0.0 -3.6 +0.2 +0.3 N.D.
retron_ec_48_control retron_Ec_48_control -0.0 -3.6 +0.3 +0.3 N.D.
drt_type_3 DRT_type_3 +0.1 -3.5 +0.3 +0.3 N.D.
control PBS_cage_2_mouse_2_Cecum_40 hr +0.1 -3.4 +0.3 +0.4 N.D.
mzaabcde mzaABCDE +0.1 -3.4 +0.3 +0.4 N.D.
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -1.1 +2.5 +0.2 +0.4 N.D.
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -0.6 +4.2 +0.2 +0.3 N.D.
stress Chlorite 1.25 mM +0.5 +3.6 +0.2 -0.0 N.D.
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