Fitness for 5 genes in Escherichia coli BW25113

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500 ntfdoH and fdoG are separated by 12 nucleotidesfdoG and fdhD are separated by 193 nucleotidesfdhD and yiiG are separated by 152 nucleotidesyiiG and frvR are separated by 49 nucleotides b3893: fdoH - formate dehydrogenase-O, Fe-S subunit (NCBI), at 4,079,880 to 4,080,782 fdoH b3894: fdoG - formate dehydrogenase-O, large subunit (NCBI), at 4,080,795 to 4,083,845 fdoG b3895: fdhD - formate dehydrogenase accessory protein (NCBI), at 4,084,039 to 4,084,872 fdhD b3896: yiiG - hypothetical protein (NCBI), at 4,085,025 to 4,086,080 yiiG b3897: frvR - predicted regulator (NCBI), at 4,086,130 to 4,087,878 frvR
Group Condition b3893 b3894 b3895 b3896 b3897
fdoH fdoG fdhD yiiG frvR
stress 2,4-Dinitrophenol 2 mM -2.2 -2.4 -2.3 +0.1 +0.1
stress 2,4-Dinitrophenol 2 mM -1.7 -1.8 -2.3 +0.1 +0.0
stress octanol 0.08 vol% -1.5 -1.1 -1.6 -0.2 +0.2
stress LB Aerobic with Irgasan 0.0000003125 mM -0.8 -0.9 -0.1 +0.3 +0.1
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -0.4 -0.2 -1.1 +0.4 +0.0
phage Ste41 +0.4 +0.3 -0.5 -0.6 -0.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.4 +0.8 +0.1 -0.5 -0.2
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.7 +0.9 +1.1 -0.1 -0.3
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.0 +0.8 +1.0 -0.4 -0.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.3 +0.7 +1.0 -0.2 -0.3
plasmid transformation vcDART vector transformation; agar assay +0.3 +0.6 +0.8 -0.2 -0.1
plasmid transformation vcDART vector transformation; agar assay +0.3 +0.6 +0.8 -0.1 -0.1
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.3 +0.9 +0.8 -0.3 -0.2
motility outer cut, LB soft agar motility assay +0.3 +0.7 +1.1 -0.3 -0.1
stress LB Aerobic with Hygromycin B 0.000015625 mM +0.6 +0.5 +0.8 -0.1 +0.0
stress toluene 2.5 vol% +0.6 +0.9 +0.7 -0.0 -0.0
motility outer cut, LB soft agar motility assay +0.8 +0.8 +1.0 -0.2 -0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.1 +1.4 +1.1 +0.3 -0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +1.0 +1.2 +0.8 -0.4 +0.1
stress 2-Furfuraldehyde 0.25 vol% +0.8 +1.0 +1.1 -0.1 +0.0
stress 1-ethyl-3-methylimidazolium chloride 80 mM +1.0 +1.2 +1.0 -0.1 -0.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +1.3 +1.1 +0.7 -0.2 +0.1
stress LB Aerobic with Nitrofurantoin 0.00003125 mM +1.0 +1.1 +1.3 -0.1 -0.1
stress Cisplatin 0.1 mg/ml +1.1 +1.5 +1.0 -0.1 -0.0
stress 1-ethyl-3-methylimidazolium chloride 40 mM +1.3 +1.3 +1.3 -0.2 -0.0
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM +1.6 +1.5 +1.4 -0.2 +0.1
stress Spectinomycin 0.00625 mg/ml +1.4 +1.6 +1.6 -0.0 +0.0
stress Benzalkonium Chloride 0.004 mg/ml +1.7 +1.9 +1.7 -0.3 -0.0
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM +2.2 +2.2 +2.0 -0.2 +0.0
stress Spectinomycin 0.0125 mg/ml +1.9 +2.3 +2.2 -0.0 -0.0
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