Fitness for 5 genes in Escherichia coli BW25113

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500 ntrrfA and mobB are separated by 269 nucleotidesmobB and mobA overlap by 19 nucleotidesmobA and yihD are separated by 69 nucleotidesyihD and yihE are separated by 76 nucleotides b3855: rrfA - 5S ribosomal RNA (NCBI), at 4,038,540 to 4,038,659 rrfA b3856: mobB - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 4,038,929 to 4,039,456 mobB b3857: mobA - molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI), at 4,039,438 to 4,040,022 mobA b3858: yihD - hypothetical protein (NCBI), at 4,040,092 to 4,040,361 yihD b3859: yihE - predicted kinase (NCBI), at 4,040,438 to 4,041,424 yihE
Group Condition b3855 b3856 b3857 b3858 b3859
rrfA mobB mobA yihD yihE
stress Aluminum chloride 5 mM N.D. +0.2 +0.3 -3.8 -0.4
mzaabcde mzaABCDE N.D. -0.4 -1.0 -1.2 -0.4
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr N.D. -0.2 -1.1 -1.9 +0.2
gfp_control GFP_control N.D. -0.1 -1.2 -1.3 -0.4
stress LB Anaerobic with Hygromycin B 0.00025 mM N.D. -0.0 -2.1 -0.4 -0.2
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM N.D. +0.5 -3.0 -0.2 -0.0
ppi ppI N.D. -0.4 -1.0 -1.2 -0.1
control PBS_cage_1_mouse_2_Cecum_40 hr N.D. +0.0 -1.3 -1.6 +0.2
stress LB Anaerobic with Azlocillin 0.00003125 mM N.D. -0.2 -1.2 -0.9 -0.2
sir2-hera SIR2-HerA N.D. -0.2 -0.7 -1.2 -0.3
stress Chlorite 1.25 mM N.D. -0.2 -0.1 -1.4 -0.6
stress LB Anaerobic with Furaltadone 0.000015625 mM N.D. +0.3 -2.5 -0.3 +0.3
stress 2,4-Dinitrophenol 2 mM N.D. -0.2 -2.1 +0.1 +0.1
stress Fusidic 0.03 mg/ml N.D. -0.2 +0.5 -1.9 -0.4
phage Phage_N4_cage_3_mice _Feces_16 hr N.D. -0.0 -0.7 -1.4 +0.1
control PBS_cage_1_mice _Feces_16 hr N.D. +0.2 -1.4 -1.1 +0.3
stress LB Anaerobic with Chloramphenicol 0.000001953125 mM N.D. +0.5 -2.1 -0.1 -0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. +0.4 +1.4 -3.4 -0.1
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM N.D. +0.6 -1.4 -1.1 +0.2
stress octanol 0.08 vol% N.D. +0.1 -1.7 +0.4 -0.2
predation 6 hr rep1_HD100_10fold_dilution_grewON N.D. +0.2 -1.5 -0.2 +0.5
stress LB Anaerobic with Hygromycin B 0.00025 mM N.D. +0.3 -1.5 +0.5 -0.1
stress Spectinomycin 0.00625 mg/ml N.D. -0.4 +1.8 -0.3 -0.4
stress Benzalkonium Chloride 0.004 mg/ml N.D. +0.0 +2.1 -0.5 -0.6
stress Cisplatin 0.1 mg/ml N.D. -0.1 +1.4 +0.8 -0.6
motility outer cut, LB soft agar motility assay N.D. +0.1 +2.6 -0.7 +0.0
stress LB Aerobic with Nitrofurantoin 0.00003125 mM N.D. +0.4 +1.5 +0.6 +0.0
motility inner cut, LB soft agar motility assay N.D. +0.6 +1.1 +1.0 -0.1
stress Spectinomycin 0.0125 mg/ml N.D. -0.3 +2.6 +0.6 +0.0
motility outer cut, LB soft agar motility assay N.D. -0.0 +2.4 +0.8 -0.0
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