Fitness for 5 genes in Escherichia coli BW25113

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500 ntrho and rfe are separated by 239 nucleotidesrfe and wzzE are separated by 11 nucleotideswzzE and rffE are separated by 55 nucleotidesrffE and rffD overlap by 4 nucleotides b3783: rho - transcription termination factor Rho (NCBI), at 3,964,440 to 3,965,699 rho b3784: rfe - UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI), at 3,965,939 to 3,967,042 rfe b3785: wzzE - putative transport protein (VIMSS), at 3,967,054 to 3,968,100 wzzE b3786: rffE - UDP-N-acetyl glucosamine-2-epimerase (NCBI), at 3,968,156 to 3,969,286 rffE b3787: rffD - UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI), at 3,969,283 to 3,970,545 rffD
Group Condition b3783 b3784 b3785 b3786 b3787
rho rfe wzzE rffE rffD
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. -6.6 -2.3 -4.1 -5.5
stress octanol 0.08 vol% N.D. -5.8 -1.7 -5.1 -5.5
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM N.D. -4.1 -3.4 -4.4 -4.3
mzaabcde mzaABCDE N.D. -5.5 -1.0 -4.4 -4.8
mzaabcde mzaABCDE N.D. -4.4 -0.7 -5.7 -4.8
mzaabcde mzaABCDE N.D. -4.2 -1.0 -4.4 -5.5
ppi ppI N.D. -4.6 -1.0 -4.6 -4.8
stress 2,4-Dinitrophenol 2 mM N.D. -4.8 -1.5 -4.2 -4.3
drt_type_3 DRT_type_3 N.D. -4.9 -0.7 -4.3 -4.7
sir2-hera SIR2-HerA N.D. -4.7 -0.8 -4.2 -4.3
retron_ec_48_control retron_Ec_48_control N.D. -4.5 -0.8 -4.5 -4.2
drt_type_3 DRT_type_3 N.D. -4.0 -0.8 -4.6 -4.2
sir2-hera SIR2-HerA N.D. -4.2 -1.0 -4.2 -4.1
gfp_control GFP_control N.D. -4.0 -0.7 -4.0 -4.7
gfp_control GFP_control N.D. -4.2 -0.6 -4.2 -4.1
gfp_control GFP_control N.D. -3.8 -0.9 -4.3 -4.2
ppi ppI N.D. -4.1 -1.0 -4.1 -3.8
drt_type_3 DRT_type_3 N.D. -3.9 -0.9 -4.0 -4.1
ppi ppI N.D. -3.9 -1.0 -3.9 -4.1
retron_ec_48_control retron_Ec_48_control N.D. -4.5 -0.6 -4.1 -3.6
stress 2,4-Dinitrophenol 2 mM N.D. -3.7 -1.5 -3.8 -3.7
sir2-hera SIR2-HerA N.D. -3.7 -0.9 -4.5 -3.6
retron_ec_48_control retron_Ec_48_control N.D. -3.9 -1.0 -3.9 -3.3
stress Benzalkonium Chloride 0.004 mg/ml N.D. -3.6 -1.7 -3.3 -3.4
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM N.D. -3.6 -0.7 -3.9 -3.6
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM N.D. -3.7 -0.6 -3.8 -3.7
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. -3.4 -0.7 -3.4 -3.7
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM N.D. -3.7 -1.2 -2.9 -3.2
motility outer cut, LB soft agar motility assay N.D. -3.4 -0.3 -3.5 -3.6
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM N.D. +2.9 +2.1 +3.1 +3.0
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