Fitness for 5 genes in Escherichia coli BW25113

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500 ntilvA and ilvY are separated by 51 nucleotidesilvY and ilvC are separated by 149 nucleotidesilvC and ppiC are separated by 86 nucleotidesppiC and yifN are separated by 198 nucleotides b3772: ilvA - threonine dehydratase (NCBI), at 3,953,354 to 3,954,898 ilvA b3773: ilvY - DNA-binding transcriptional dual regulator (NCBI), at 3,954,950 to 3,955,843 ilvY b3774: ilvC - ketol-acid reductoisomerase (NCBI), at 3,955,993 to 3,957,468 ilvC b3775: ppiC - peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI), at 3,957,555 to 3,957,836 ppiC b3777: yifN - conserved protein (pseudogene) (NCBI), at 3,958,035 to 3,958,483 yifN
Group Condition b3772 b3773 b3774 b3775 b3777
ilvA ilvY ilvC ppiC yifN
carbon source Ying_sugar7 rep B; time point 3 -8.7 -9.0 -9.2 +0.1 +0.0
carbon source Ying_sugar7 rep A; time point 3 -8.6 -8.6 -9.2 -0.1 +0.1
carbon source Ying_sugar7 rep A; time point 2 -8.7 -8.5 -9.0 -0.2 +0.0
carbon source Ying_sugar7 rep C; time point 3 -8.2 -8.4 -9.0 +0.0 +0.2
carbon source Ying_sugar7 rep C; time point 2 -8.0 -8.3 -9.1 -0.0 +0.2
carbon source Ying_sugar7 rep B; time point 2 -8.5 -7.7 -8.8 +0.2 -0.1
carbon source Ying_Nucleobase14 rep B; time point 3 -8.5 -7.7 -8.8 +0.2 -0.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -7.3 -8.0 -9.1 -0.1 +0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 -6.5 -8.7 -8.8 -0.1 -0.0
carbon source Ying_Nucleobase14 rep A; time point 3 -8.7 -6.0 -9.2 -0.1 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -7.3 -7.3 -9.0 -0.2 -0.0
carbon source Ying_Nucleobase14 rep C; time point 3 -8.6 -5.9 -9.0 -0.1 -0.0
carbon source Ying_Nucleobase14 rep C; time point 2 -8.2 -5.1 -7.6 -0.1 -0.1
carbon source carbon source D-Glucose 1mM -7.5 -5.4 -7.8 -0.4 -0.1
carbon source Ying_Nucleobase14 rep B; time point 2 -8.1 -4.0 -8.4 -0.0 -0.1
carbon source carbon source D-Mannose 1mM -8.0 -4.6 -7.4 +0.2 -0.3
carbon source carbon source D-Mannose 0.5mM -6.7 -6.9 -6.4 -0.1 +0.2
carbon source Ying_Nucleobase14 rep A; time point 2 -7.3 -3.8 -8.0 -0.2 +0.0
carbon source carbon source D-Mannose 1mM -7.3 -3.3 -8.5 +0.2 -0.0
carbon source Ying_OrganicAcid7 rep C; time point 2 -5.1 -5.8 -7.7 +0.2 -0.0
carbon source Ying_OrganicAcid7 rep A; time point 2 -5.0 -7.1 -6.4 +0.2 -0.0
carbon source Ying_OrganicAcid7 rep B; time point 2 -5.1 -5.8 -7.3 -0.2 +0.1
carbon source carbon source D-Glucose 0.5mM -6.1 -6.0 -5.4 -0.5 -0.1
carbon source carbon source D-Mannose 20mM -6.3 -3.9 -7.0 -0.1 -0.1
carbon source carbon source D-Mannose 5mM -6.6 -3.8 -6.5 -0.3 +0.1
carbon source carbon source D-Mannose 0.5mM -5.8 -4.1 -6.3 -0.5 +0.0
carbon source carbon source D-Glucose 0.25mM -5.0 -3.5 -7.5 -0.6 +0.2
carbon source carbon source D-Mannose 5mM -6.7 -3.1 -6.6 +0.0 -0.1
carbon source carbon source D-Glucose 0.5mM -5.4 -3.5 -7.1 -0.3 +0.1
carbon source carbon source D-Mannose 20mM -6.1 -3.5 -6.3 -0.1 +0.0
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