Fitness for 5 genes in Escherichia coli BW25113

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500 nttrpT and hdfR are separated by 95 nucleotideshdfR and yifE are separated by 118 nucleotidesyifE and yifB are separated by 24 nucleotidesyifB and ilvL are separated by 352 nucleotides b3761: trpT - tRNA-Trp (NCBI), at 3,944,980 to 3,945,055 trpT b4480: hdfR - transcriptional regulator HdfR (NCBI), at 3,945,151 to 3,945,990 hdfR b3764: yifE - hypothetical protein (NCBI), at 3,946,109 to 3,946,447 yifE b3765: yifB - predicted bifunctional enzyme and transcriptional regulator (RefSeq), at 3,946,472 to 3,947,992 yifB b3766: ilvL - ilvG operon leader peptide (NCBI), at 3,948,345 to 3,948,443 ilvL
Group Condition b3761 b4480 b3764 b3765 b3766
trpT hdfR yifE yifB ilvL
carbon source carbon source D-Mannose 0.5mM -5.9 -1.6 -3.8 -0.5 -0.6
stress octanol 0.08 vol% -2.0 -4.6 -3.9 -0.5 -1.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 -6.2 -2.8 -1.3 +0.0 -0.3
carbon source Ying_sugar7 rep A; time point 3 -1.5 -4.3 -4.1 -0.3 -0.1
stress undecene 5 vol% -0.5 -3.8 -5.2 -0.4 -0.3
stress LB Anaerobic with Cephalothin 0.0000078125 mM -3.2 -2.2 -3.2 -0.4 -0.8
stress 2,4-Dinitrophenol 2 mM -0.4 -4.7 -4.1 -0.3 -0.3
carbon source Ying_sugar7 rep B; time point 3 -1.9 -4.0 -3.8 -0.2 +0.4
nitrogen source Putrescine (N) +0.2 -4.2 -4.2 -0.4 -0.8
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -1.0 -3.8 -3.9 -0.4 -0.1
stress undecene 5 vol% -0.4 -4.4 -3.7 -0.4 -0.1
carbon source Glycolic Acid (C) -1.4 -3.3 -4.0 -0.2 +0.2
nitrogen source L-Serine (N) -0.6 -2.7 -4.0 -0.0 -1.3
carbon source Glycolic Acid (C) -0.6 -3.7 -4.5 -0.1 +0.4
nitrogen source Putrescine (N) +0.4 -3.8 -4.8 -0.3 -0.0
carbon source carbon source D-Mannose 1mM +1.0 -1.5 -5.7 -0.5 +0.4
msc 22hr_mediaonly_rep1_lowinoculum -1.7 +3.6 +3.8 +0.2 -0.5
stress LB Anaerobic with Ampicillin 0.00000195313 mM -0.6 +3.5 +3.6 -0.3 -0.6
motility inner cut, LB soft agar motility assay -0.2 +4.1 +3.9 +0.2 -1.0
motility inner cut, LB soft agar motility assay -1.4 +3.9 +4.3 +0.4 -0.0
motility inner cut, LB soft agar motility assay -1.6 +4.4 +4.6 +0.6 -0.3
motility inner cut, LB soft agar motility assay +0.6 +4.0 +3.7 +0.3 -0.5
msc 22hr_MSC_rep1_highinoculum +0.0 +4.4 +4.2 +0.4 -0.9
msc 22hr_mediaonly_rep2_lowinoculum -0.2 +4.7 +4.9 +0.2 -0.2
motility outer cut, LB soft agar motility assay -2.9 +6.0 +6.3 +1.0 -0.6
motility outer cut, LB soft agar motility assay -1.7 +5.3 +5.4 +0.6 +0.6
msc 22hr_MSC_rep2_highinoculum -1.0 +5.5 +5.4 +0.4 -0.2
msc 22hr_MSC_rep1_lowinoculum -0.9 +5.3 +5.1 +0.4 +0.3
motility outer cut, LB soft agar motility assay -1.0 +5.8 +5.7 +0.8 +0.6
msc 22hr_MSC_rep2_lowinoculum -0.2 +5.8 +5.7 +0.6 -0.0
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