Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1179 experiments or choose conditions or try the comparative fitness browser

500 ntrbsB and rbsK are separated by 125 nucleotidesrbsK and rbsR are separated by 3 nucleotidesrbsR and hsrA overlap by 35 nucleotideshsrA and yieP are separated by 22 nucleotides b3751: rbsB - D-ribose transporter subunit (NCBI), at 3,934,301 to 3,935,191 rbsB b3752: rbsK - ribokinase (NCBI), at 3,935,317 to 3,936,246 rbsK b3753: rbsR - DNA-binding transcriptional repressor of ribose metabolism (NCBI), at 3,936,250 to 3,937,242 rbsR b3754: hsrA - predicted multidrug or homocysteine efflux system (NCBI), at 3,937,208 to 3,938,635 hsrA b3755: yieP - predicted transcriptional regulator (NCBI), at 3,938,658 to 3,939,350 yieP
Group Condition b3751 b3752 b3753 b3754 b3755
rbsB rbsK rbsR hsrA yieP
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.5 -2.9 -2.1 +0.0 -0.7
plasmid transformation vcDART vector transformation; liquid outgrowth assay +1.0 -2.5 -1.9 +0.2 -1.2
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.9 -2.1 -1.6 -0.1 -0.9
plasmid transformation vcDART vector transformation; liquid outgrowth assay +1.4 -2.0 -2.4 -0.0 -0.8
carbon source Glycolic Acid (C) +0.2 +1.3 +2.9 +0.1 -4.1
carbon source Glycolic Acid (C) +0.2 +1.3 +3.0 +0.1 -3.6
carbon source D-Ribose (C) -0.5 -4.2 +5.9 -0.2 +0.2
carbon source D-Ribose (C) -0.8 -3.8 +5.9 -0.0 +0.2
carbon source Inosine 0.3728 mM (C) +0.2 +1.5 +1.6 +0.1 +2.3
carbon source acetate (C) +0.2 +2.1 +3.7 +0.1 +0.7
carbon source Guanosine 0.35306 mM (C) -0.1 +2.5 +2.4 +0.0 +2.2
carbon source succinate (C) +0.6 +2.5 +3.8 +0.0 +0.2
carbon source acetate (C) +0.2 +2.2 +4.0 -0.0 +0.9
carbon source succinate (C) +0.5 +2.8 +4.2 +0.0 +0.0
M9 Acetate 0.5% aerobic +0.4 +2.4 +5.1 -0.1 -0.2
carbon source L-Malic (C) +1.0 +2.7 +4.1 +0.1 -0.1
M9 Acetate 0.5% aerobic +0.5 +2.5 +5.4 -0.1 -0.3
carbon source L-Malic (C) +0.9 +3.0 +4.5 +0.0 -0.2
carbon source a-Ketoglutaric (C) +0.7 +2.3 +4.9 +0.1 +0.3
carbon source a-Ketoglutaric (C) +0.7 +2.4 +5.1 +0.1 +0.4
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.1 +2.7 +3.7 +0.0 +2.7
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.1 +3.1 +4.2 -0.1 +2.3
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.0 +3.8 +5.2 +0.1 +3.1
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.1 +3.5 +4.9 +0.0 +3.9
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.2 +3.5 +5.2 -0.1 +4.1
carbon source Acetate (C) +0.9 +3.7 +6.8 +0.1 +1.2
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.2 +4.2 +5.6 +0.0 +3.2
carbon source Acetate (C) +1.0 +4.1 +6.9 -0.1 +1.5
carbon source Ying_Others16 rep B; time point 2 -0.1 +3.5 +5.6 -0.0 +4.6
carbon source Ying_Others16 rep A; time point 2 -0.1 +3.5 +5.8 +0.1 +4.7
remove
b3751
plot		 remove
b3752
plot		 remove
b3753		 remove
b3754
plot		 remove
b3755
plot