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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
gidA and mioC are separated by 378 nucleotides
mioC and asnC are separated by 89 nucleotides
asnC and asnA are separated by 151 nucleotides
asnA and yieM are separated by 4 nucleotides
b3741: gidA - glucose-inhibited division protein A (NCBI), at 3,921,767 to 3,923,656
gidA
b3742: mioC - flavodoxin (NCBI), at 3,924,035 to 3,924,478
mioC
b3743: asnC - DNA-binding transcriptional dual regulator (NCBI), at 3,924,568 to 3,925,026
asnC
b3744: asnA - asparagine synthetase AsnA (NCBI), at 3,925,178 to 3,926,170
asnA
b3745: yieM - predicted von Willibrand factor containing protein (NCBI), at 3,926,175 to 3,927,626
yieM
Group
Condition
b3741
b3742
b3743
b3744
b3745
gidA
mioC
asnC
asnA
yieM
stress
2,4-Dinitrophenol 2 mM
-4.5
-2.4
-0.2
-0.0
+0.4
stress
2,4-Dinitrophenol 2 mM
-4.0
-2.2
-0.1
+0.0
+0.5
phage
T7_phage 0.00015625 MOI TC2
-2.9
-2.6
-0.2
+0.2
+0.1
stress
Bacitracin 1 mg/ml
-2.3
-2.9
-0.0
+0.2
-0.0
sulfur source
M63 no sulfur + 5 mM sulfate
-5.1
+0.1
+0.0
-0.1
+0.1
sulfur source
M63 no sulfur + 5 mM L-cys
-4.9
+0.3
-0.1
-0.0
-0.0
sulfur source
M63 no sulfur + 5 mM sulfate
-4.8
-0.0
+0.0
-0.0
+0.1
sulfur source
M63 no sulfur + 5 mM L-cys
-4.6
-0.1
-0.1
-0.0
+0.1
phage
Δdbn_10
-1.9
-2.3
-0.3
+0.1
-0.3
phage
TP4
-1.3
-3.7
+0.3
+0.0
+0.0
control
PBS_cage_1_mouse_1_Cecum_40 hr
-3.6
-1.1
-0.4
+0.1
+0.3
phage
Phage_N4_cage_3_mice _Feces_40 hr
-4.5
-0.2
-0.1
+0.0
+0.4
phage
Phage_N4_cage_3_mouse_1_Cecum_40 hr
-4.4
-0.3
-0.1
+0.1
+0.4
phage
Phage_N4_cage_4_mice _Feces_40 hr
-4.2
-0.6
-0.1
+0.1
+0.3
carbon source
Glycolic Acid (C)
-2.9
-1.3
-0.1
+0.3
-0.5
stress
Chlorite 1.25 mM
-1.6
-3.2
-0.1
+0.2
+0.2
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.1
-4.2
-0.1
-0.2
+0.6
phage
T7_phage 0.0015625 MOI TC1
-2.2
-2.4
+0.2
+0.4
+0.2
stress
2-nitrobenzenesulfonyl fluoride
-0.2
-4.1
+0.1
+0.2
+0.2
control
PBS_cage_2_mouse_2_Cecum_40 hr
-3.4
-0.7
-0.1
+0.1
+0.4
phage
Phage_N4_cage_3_mouse_2_Cecum_40 hr
-3.5
-0.6
+0.1
+0.2
+0.3
carbon source
Dodecanol and Rhamnolipid (C)
-4.5
+1.0
+0.2
+0.0
-0.0
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
-4.3
+0.4
+0.3
+0.1
+0.4
carbon source
Dodecanol and Rhamnolipid (C)
-4.0
+0.6
+0.2
+0.1
-0.1
stress
LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
+1.4
-3.8
-0.2
+0.1
+1.5
stress
LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
+1.6
-4.0
+0.2
-0.0
+1.4
stress
toluene 2.5 vol%
-3.3
+2.3
+0.1
+0.0
+0.0
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+1.7
-3.3
+0.1
+0.3
+1.2
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+3.3
-2.8
+0.5
+0.4
+1.5
stress
Benzalkonium Chloride 0.004 mg/ml
+3.2
+1.7
-0.4
+0.5
+0.6
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