Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1179 experiments or choose conditions or try the comparative fitness browser

500 nttnaC and tnaA are separated by 220 nucleotidestnaA and tnaB are separated by 90 nucleotidestnaB and mdtL are separated by 131 nucleotidesmdtL and yidZ overlap by 26 nucleotides b3707: tnaC - tryptophanase leader peptide (NCBI), at 3,886,458 to 3,886,532 tnaC b3708: tnaA - tryptophanase (VIMSS), at 3,886,753 to 3,888,168 tnaA b3709: tnaB - tryptophan transporter of low affinity (NCBI), at 3,888,259 to 3,889,506 tnaB b3710: mdtL - multidrug efflux system protein (NCBI), at 3,889,638 to 3,890,813 mdtL b3711: yidZ - predicted DNA-binding transcriptional regulator (NCBI), at 3,890,788 to 3,891,747 yidZ
Group Condition b3707 b3708 b3709 b3710 b3711
tnaC tnaA tnaB mdtL yidZ
carbon source Ying_AminoAcid20 rep A; time point 3 N.D. -1.6 -1.0 +0.1 -0.1
carbon source Ying_AminoAcid20 rep B; time point 3 N.D. -1.3 -0.9 +0.1 -0.1
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. -1.3 -0.9 +0.2 +0.1
carbon source Ying_AminoAcid20 rep A; time point 2 N.D. -1.1 -0.8 +0.2 +0.1
carbon source Ying_AminoAcid20 rep C; time point 2 N.D. -0.9 -0.6 +0.2 -0.0
carbon source Ying_AminoAcid20 rep B; time point 2 N.D. -1.0 -0.6 +0.2 +0.0
phage Δdbn_10 N.D. -0.1 +0.1 -0.1 -0.9
stress Trimethoprim 0.0025 mM N.D. -0.0 -0.0 +0.1 -1.1
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr N.D. +0.2 +0.2 -0.6 -0.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay N.D. +0.6 -0.0 -0.6 -0.3
plasmid transformation mariner vector transformation; liquid outgrowth assay N.D. +0.5 -0.4 -0.4 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay N.D. +0.5 -0.1 -0.1 -0.4
plasmid transformation vcDART vector transformation; liquid outgrowth assay N.D. +0.9 -0.2 -0.3 -0.5
plasmid transformation mariner vector transformation; liquid outgrowth assay N.D. +0.7 +0.0 -0.2 -0.5
plasmid transformation vcDART vector transformation; liquid outgrowth assay N.D. +1.1 +0.0 -0.4 -0.4
motility outer cut, LB soft agar motility assay N.D. -0.2 +0.1 +0.3 +0.6
stress LB Anaerobic with Cefoxitin 0.000003125 mM N.D. +0.7 +0.4 -0.1 -0.2
stress Nickel (II) chloride 1.5 mM N.D. +0.5 +0.4 -0.1 +0.3
stress Ciprofloxacin Hydrochloride 0.0003 mM N.D. +0.3 +0.4 +0.4 +0.2
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. +0.4 +0.2 +0.5 +0.2
phage RB68 N.D. +0.2 +0.4 +0.3 +0.5
carbon source D-Ribose (C) N.D. +0.6 +0.4 +0.3 +0.1
carbon source Glycolic Acid (C) N.D. +0.8 +0.6 +0.2 -0.1
carbon source Glycolic Acid (C) N.D. +0.7 +0.5 +0.2 -0.0
stress Nickel (II) chloride 1.5 mM N.D. +0.6 +0.4 +0.0 +0.4
stress octanol 0.08 vol% N.D. +0.3 +0.3 +0.5 +0.4
stress Nickel (II) chloride 1.5 mM N.D. +0.5 +0.4 +0.2 +0.4
phage Ste41 N.D. +0.2 +0.4 +0.8 +0.3
stress Ciprofloxacin Hydrochloride 0.000156 mM N.D. +0.5 +0.5 +0.5 +0.3
stress Ciprofloxacin Hydrochloride 0.0003 mM N.D. +0.6 +0.5 +0.7 +0.5
remove
b3707
plot		 remove
b3708
plot		 remove
b3709		 remove
b3710
plot		 remove
b3711
plot